Gene omics information

Query gene ID	Zm.4733.1.A1_at
Gene name	hypothetical protein LOC100193930
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.4733.1.A1_at	CD441088	hypothetical protein LOC100193930	-	2e-14	At1g76900	AtTLP1 (TUBBY LIKE PROTEIN 1)	S.X.	H.G.	Please select
0.83	95.6	Zm.3876.1.S1_at	AY111960.1	hypothetical protein LOC100278092	-	5e+0	At4g17030	ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)	S.X.	H.G.	Please select
0.77	92.1	ZmAffx.1405.1.S1_at	40794996-80	-	-	0	Atmg00510	-	S.X.	H.G.	Please select
0.77	92.1	Zm.13136.1.A1_at	CA404810	hypothetical protein LOC100191921	-	4e+0	At4g32900	aminoacyl-tRNA hydrolase	S.X.	H.G.	Please select
0.55	71.6	Zm.13055.2.S1_at	CA403909	nuclear transcription factor Y subunit B-3	-	6e-19	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	S.X.	H.G.	Please select
0.27	24.6	Zm.17833.1.S1_at	CK394754	hypothetical protein LOC100277612	-	2e+0	At3g13740	URF 4-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.4	97.0	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.3	96.9	GSM202314	Mo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.3	96.9	GSM202324	Mo17xB73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.2	96.9	GSM202309	Mo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.8	96.6	GSM202318	B73xMo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.6	96.4	GSM202316	Mo17xB73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.5	96.3	GSM202313	B73xMo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.2	96.0	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.2	96.0	GSM202322	B73x Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.0	95.8	GSM202311	Mo17xB73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	2e-59	230	Zm.3378.1.A1_at	BQ538332	tubby-like protein	-	7e-11	At1g76900	AtTLP1 (TUBBY LIKE PROTEIN 1)	C.G.	S.X.	Please select
0.12	2e-27	123	Zm.12748.1.S1_at	AW066809	tubby-like protein	-	7e-8	At2g47900	AtTLP3 (TUBBY LIKE PROTEIN 3)	C.G.	S.X.	Please select
0.10	6e-22	105	Zm.13733.1.S1_at	AY106234.1	hypothetical protein LOC100273859	-	1e-2	At2g47900	AtTLP3 (TUBBY LIKE PROTEIN 3)	C.G.	S.X.	Please select
0.13	6e-19	95	Zm.5878.1.A1_at	BU572163	hypothetical protein LOC100191954	-	6e-9	At1g76900	AtTLP1 (TUBBY LIKE PROTEIN 1)	C.G.	S.X.	Please select
0.11	3e-17	89	Zm.1386.1.S1_at	CF623901	hypothetical protein LOC100191903	-	2e-10	At1g43640	AtTLP5 (TUBBY LIKE PROTEIN 5)	C.G.	S.X.	Please select
0.10	5e-13	75	Zm.7809.1.A1_at	BM079983	hypothetical protein LOC100273081	-	2e-8	At1g47270	AtTLP6 (TUBBY LIKE PROTEIN 6)	C.G.	S.X.	Please select
0.06	1e-10	67	Zm.8138.1.A1_at	BM336608	tubby protein	-	1e-3	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.22.1.S1_a_at	M26227.1	anthocyanin regulatory Lc protein	-	9e-5	At1g63650	EGL3 (ENHANCER OF GLABRA 3)	C.G.	S.X.	Please select
0.03	2e+0	34	Zm.8775.1.A1_at	BM338343	hypothetical protein LOC100278477	-	1e+0	At3g08890	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	2e-14	81	Arabidopsis thaliana	At1g76900	844025	AtTLP1 (TUBBY LIKE PROTEIN 1)	Member of TLP family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	1e-13	79	Glycine max	GmaAffx.71638.1.S1_at	BE440902	-	-	2e-13	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	C.G.	S.X.	Please select
0.20	7e-28	125	Hordeum vulgare	Contig19484_at	Contig19484	-	-	3e-2	At1g47270	AtTLP6 (TUBBY LIKE PROTEIN 6)	C.G.	S.X.	Please select
0.40	4e-100	367	Oryza sativa	Os11g0163600	AK070139.1	-	The start codon is not identified.	2e-2	At1g76900	AtTLP1 (TUBBY LIKE PROTEIN 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	2e-9	65	Populus trichocarpa	PtpAffx.26405.1.S1_at	CV264748	f-box family protein /// hypothetical protein /// f-box family protein	-	2e-23	At1g43640	AtTLP5 (TUBBY LIKE PROTEIN 5)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.36	1e-157	557	Triticum aestivum	TaAffx.31041.1.S1_at	CA620101	-	-	1e+0	At1g08315	armadillo/beta-catenin repeat family protein	C.G.	S.X.	Please select
0.13	2e-5	50	Vitis vinifera	1619305_at	CB917161	hypothetical protein LOC100246937	-	8e-11	At1g25280	AtTLP10 (TUBBY LIKE PROTEIN 10)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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