Gene omics information

Query gene ID	Zm.4715.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.4	Zm.4715.1.A1_at	AI600987	-	-	6e+0	At5g65660	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.1061.1.A1_at	AI881945	Hypothetical protein LOC100193941	-	2e-1	At4g22160	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.10590.3.S1_at	AI649831	hypothetical protein LOC100194331	-	3e-3	At3g15060	AtRABA1g (Arabidopsis Rab GTPase homolog A1g)	S.X.	H.G.	Please select
0.27	24.6	ZmAffx.593.1.S1_at	AI715021	-	-	2e-1	At3g28630	-	S.X.	H.G.	Please select
0.25	21.3		-	-	-	0			S.X.	H.G.	Please select
0.18	11.6	Zm.12248.3.S1_at	AI770379	hypothetical protein LOC100216999	-	3e+0	At5g65660	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
38.7	99.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
35.6	99.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
34.0	99.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.7	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.8	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.5	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-7	56	Zm.5732.1.A1_x_at	AY108368.1	hypothetical protein LOC100272253	-	1e+0	At1g05780	unknown protein	C.G.	S.X.	Please select
0.04	2e-7	56	Zm.5732.1.A1_at	AY108368.1	hypothetical protein LOC100272253	-	1e+0	At1g05780	unknown protein	C.G.	S.X.	Please select
0.04	7e-7	54	Zm.322.1.S1_at	AJ297903.1	basal layer antifungal peptide	-	5e+0	At5g06230	unknown protein	C.G.	S.X.	Please select
0.02	1e-5	50	Zm.2862.1.A1_a_at	CF054010	calnexin	-	6e-73	At5g61790	calnexin 1 (CNX1)	C.G.	S.X.	Please select
0.02	1e-5	50	Zm.2862.1.A1_at	CF054010	Calnexin	-	6e-73	At5g61790	calnexin 1 (CNX1)	C.G.	S.X.	Please select
0.03	4e-5	48	Zm.5781.1.A1_at	CK369535	hypothetical protein LOC100278740	-	3e-14	At4g33865	40S ribosomal protein S29 (RPS29C)	C.G.	S.X.	Please select
0.04	2e-4	46	Zm.2984.2.A1_at	CF059668	-	-	3e+0	At5g39520	unknown protein	C.G.	S.X.	Please select
0.04	2e-4	46	Zm.2984.2.S1_at	AW120242	-	-	3e+0	At5g39520	unknown protein	C.G.	S.X.	Please select
0.03	2e-4	46	Zm.14088.2.A1_a_at	BM379465	aconitate hydratase, cytoplasmic	-	5e-19	At2g05710	aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At5g65660	836692	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PMOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-2	40	Glycine max	GmaAffx.89050.1.A1_at	CK605986	-	-	6e-1	At1g29480	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	HVSMEb0020I08f_at	HVSMEb0020I08f	-	-	3e+0	Atmg01040	-	C.G.	S.X.	Please select
0.03	7e-1	36	Oryza sativa	OsAffx.779.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e-2	40	Populus trichocarpa	Ptp.3270.1.S1_at	DN485769	-	-	6e-7	At3g08580	AAC1 (ADP/ATP CARRIER 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e-4	48	Triticum aestivum	TaAffx.22805.1.S1_at	CA744766	-	-	1e+0	At3g05935	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1622149_s_at	BQ792686	hypothetical protein LOC100248230	-	3e-1	At2g37480	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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