Gene omics information

Query gene ID	Zm.4714.1.A1_at
Gene name	peptide chain release factor 2
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.4714.1.A1_at	AI738144	peptide chain release factor 2	-	3e-14	At1g56350	peptide chain release factor, putative	S.X.	H.G.	Please select
0.83	95.6	Zm.6419.1.A1_at	CF635415	xyloglucan endotransglucosylase/hydrolase	-	3e-6	At5g13870	EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)	S.X.	H.G.	Please select
0.73	89.9	Zm.4793.4.A1_x_at	BM340717	hypothetical protein LOC100193376	-	7e-5	At3g10860	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	S.X.	H.G.	Please select
0.50	65.7	Zm.12612.1.A1_at	BU050513	-	-	6e-1	At1g23260	MMZ1 (MMS ZWEI HOMOLOGUE 1)	S.X.	H.G.	Please select
0.44	55.7	Zm.8573.1.S1_a_at	BU051013	-	-	2e+1	At5g01640	PRA1.B5 (PRENYLATED RAB ACCEPTOR 1.B5)	S.X.	H.G.	Please select
0.36	41.3	Zm.4476.1.S1_at	CN844697	hypothetical protein LOC100279771	-	4e+0	At3g20590	non-race specific disease resistance protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.4	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM206289	Upper pulvinus 5 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	6e-1	34	Zm.5945.1.S1_a_at	AY108142.1	hypothetical protein LOC100279077	-	1e+0	At3g63450	RNA binding / nucleic acid binding / nucleotide binding	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.7544.1.A1_at	BM334017	mRNA	-	3e-2	At3g20650	mRNA capping enzyme family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.588.1.S1_at	AF142322.1	yin-yang1	-	2e-7	At4g06634	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.383.1.S1_s_at	AF023165.1	leucine-rich repeat transmembrane protein kinase 2	-	1e-22	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.16778.1.A1_at	BM079117	RH2 protein-like	-	8e-69	At3g19760	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.12879.1.S1_at	AY105591.1	salt-inducible protein kinase	-	5e-26	At2g35050	protein kinase family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.1184.1.A1_at	BE512271	hypothetical protein LOC100273108	-	5e+0	At1g19180	JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.10417.1.S1_at	BI388862	hypothetical protein LOC100275074	-	2e+0	At3g20570	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.10319.1.S1_at	BQ048817	-	-	2e+1	At5g02200	FHL (FAR-RED-ELONGATED HYPOCOTYL1-LIKE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	3e-14	79	Arabidopsis thaliana	At1g56350	842089	peptide chain release factor, putative	F:translation release factor activity, codon specific, translation release factor activity;P:translational termination;C:cytoplasm;OBMFPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	3e-8	59	Glycine max	GmaAffx.42592.1.A1_at	BU549939	-	-	2e-11	At1g56350	peptide chain release factor, putative	C.G.	S.X.	Please select
0.19	1e-51	202	Hordeum vulgare	Contig17141_at	Contig17141	-	-	1e-26	At1g56350	peptide chain release factor, putative	C.G.	S.X.	Please select
0.19	1e-82	307	Oryza sativa	Os03g0305700	AK073807.1	-	Peptide chain release factor 2	5e-24	At1g56350	peptide chain release factor, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	2e-16	87	Populus trichocarpa	PtpAffx.210857.1.S1_at	pmrna21321	hypothetical protein	-	1e-38	At1g56350	peptide chain release factor, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.23	2e-46	186	Triticum aestivum	Ta.6868.2.A1_x_at	BQ168367	-	-	4e-23	At1g56350	peptide chain release factor, putative	C.G.	S.X.	Please select
0.03	6e+0	30	Vitis vinifera	1613283_at	CB346926	-	-	2e-1	At3g46230	ATHSP17.4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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