CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.4713.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 Zm.4713.1.A1_at AI738137 - - 8e-2 At1g04445 zinc finger (C2H2 type) family protein S.X. H.G.
0.80 94.0 Zm.717.1.A1_at BG842865 - - 1e+0 At5g61510 NADP-dependent oxidoreductase, putative S.X. H.G.
0.50 65.7 Zm.10049.1.A1_at BM378498 EF hand family protein - 3e+0 At5g66985 unknown protein S.X. H.G.
0.44 55.7 Zm.65.1.S1_at AJ007366.1 calcium-dependent protein kinase - 2e-12 At5g04870 CPK1 (CALCIUM DEPENDENT PROTEIN KINASE 1) S.X. H.G.
0.40 48.5 Zm.7372.2.A1_at BM351721 ORM1-like protein 2 - 3e-21 At5g42000 ORMDL family protein S.X. H.G.
0.40 48.5 Zm.4711.1.S1_at AY107508.1 - - 1e+1 At5g54990 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.5 99.3 GSM206307 Lower pulvinus 5 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
19.7 99.3 GSM206299 Left pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
19.2 99.3 GSM206295 Lower pulvinus 5 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
16.2 99.0 GSM206288 Upper pulvinus 2 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
13.9 98.8 GSM206305 Right pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
13.7 98.8 GSM206308 Lower pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
12.0 98.6 GSM206287 Left pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
10.6 98.4 GSM206293 Right pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
10.1 98.4 GSM206300 Upper pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
9.6 98.3 GSM206309 Lower pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.69 9e-151 531 Zm.9913.1.A1_at BM337435 hypothetical protein LOC100273834 - 1e+0 At3g03826 unknown protein C.G. S.X.
0.02 1e-4 46 Zm.13251.1.A1_at AI737641 sugary1 - 1e-37 At2g39930 ISA1 (ISOAMYLASE 1) C.G. S.X.
0.04 1e-4 46 Zm.11848.1.A1_at CF631118 calmodulin - 3e-1 At1g73630 calcium-binding protein, putative C.G. S.X.
0.06 6e-4 44 Zm.7954.1.A1_at BM080605 - - 4e+0 At2g37240 - C.G. S.X.
0.04 6e-4 44 Zm.7712.1.A1_at BQ539501 - - 4e+0 At4g30097 unknown protein C.G. S.X.
0.03 6e-4 44 Zm.2031.1.S1_at AY103664.1 csu1120 protein - 5e-4 At3g50550 unknown protein C.G. S.X.
0.03 6e-4 44 Zm.2031.1.A1_x_at AY103664.1 csu1120 protein - 5e-4 At3g50550 unknown protein C.G. S.X.
0.03 6e-4 44 Zm.2031.1.A1_at AY103664.1 csu1120 protein - 5e-4 At3g50550 unknown protein C.G. S.X.
0.03 2e-3 42 Zm.12133.1.S1_at CF636936 nucleotide binding protein - 1e-4 At4g35140 transducin family protein / WD-40 repeat family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e-2 38 Arabidopsis thaliana At1g04445 839514 zinc finger (C2H2 type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;P - - - C.G. S.X.
0.05 2e-3 44 Glycine max HgAffx.12051.1.S1_at CB375931 - - 6e-2 At5g47550 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.04 2e-4 46 Hordeum vulgare Contig7036_at Contig7036 - - 1e-1 At1g57565 - C.G. S.X.
0.14 7e-10 65 Oryza sativa Os03g0762100 AK108604.1 - Conserved hypothetical protein 2e+0 At1g14950 major latex protein-related / MLP-related C.G. S.X.
0.06 7e-3 42 Populus trichocarpa Ptp.4063.3.A1_at DN489930 hypothetical protein - 1e-1 At4g24230 ACBP3 (ACYL-COA-BINDING DOMAIN 3) C.G. S.X.
0.05 1e-3 44 Triticum aestivum TaAffx.57425.1.S1_at CA629467 - - 6e-2 At5g47550 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.03 1e-1 36 Vitis vinifera 1608950_at CF606755 hypothetical protein LOC100251050 - 1e-6 At5g19200 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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