Gene omics information

Query gene ID	Zm.4705.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	58.4	Zm.4705.1.A1_at	BG840802	-	-	2e-6	At1g14980	CPN10 (CHAPERONIN 10)	S.X.	H.G.	Please select
0.40	48.5	Zm.5502.1.A1_at	BM378399	hypothetical protein LOC100274214	-	1e-2	At1g14330	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.33	36.0	Zm.10125.1.A1_a_at	CF628795	cytidine/deoxycytidylate deaminase family protein	-	5e-1	At5g29807	unknown protein	S.X.	H.G.	Please select
0.21	15.5	Zm.11984.1.A1_at	AY107185.1	PB1 domain containing protein	-	5e+0	At5g25830	zinc finger (GATA type) family protein	S.X.	H.G.	Please select
0.19	12.8	Zm.12899.1.A1_at	CO531244	-	-	9e-1	At3g11750	dihydroneopterin aldolase, putative	S.X.	H.G.	Please select
0.19	12.8	Zm.11708.1.A1_at	BM380110	hypothetical protein LOC100279180	-	5e+0	At3g61530	PANB2	S.X.	H.G.	Please select
0.15	8.6	ZmAffx.934.1.A1_at	AI795526	-	-	2e-1	At2g45990	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.7	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.3	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	3e-40	165	Zm.3775.1.A1_at	AY103856.1	chaperonin	-	3e-5	At1g14980	CPN10 (CHAPERONIN 10)	C.G.	S.X.	Please select
0.03	3e-3	42	Zm.5466.2.S1_a_at	AY108444.1	hypothetical protein LOC100276605	-	1e+0	At3g17520	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	C.G.	S.X.	Please select
0.03	3e-3	42	Zm.5466.2.A1_at	AY108444.1	-	-	1e+0	At3g17520	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	C.G.	S.X.	Please select
0.03	3e-3	42	Zm.5466.2.S1_at	AY108444.1	-	-	1e+0	At3g17520	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	C.G.	S.X.	Please select
0.02	3e+0	32	ZmAffx.46.1.A1_at	AI664945	hypothetical protein LOC100273468	-	3e+0	At5g62260	DNA binding	C.G.	S.X.	Please select
0.02	3e+0	32	ZmAffx.46.1.S1_at	AI664945	-	-	3e+0	At5g62260	DNA binding	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.9371.3.A1_x_at	BM333622	hypothetical protein LOC100275410	-	1e+0	At1g53160	SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.9371.2.S1_a_at	CF631830	hypothetical protein LOC100275410	-	5e-1	At1g25420	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.9371.2.S1_x_at	CF631830	hypothetical protein LOC100275410	-	5e-1	At1g25420	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	2e-6	54	Arabidopsis thaliana	At1g14980	838063	CPN10 (CHAPERONIN 10)	Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e+0	34	Glycine max	GmaAffx.21932.1.S1_at	BE658629	-	-	9e-2	At2g48075	unknown protein	C.G.	S.X.	Please select
0.17	3e-28	125	Hordeum vulgare	Contig4654_at	Contig4654	-	-	2e-2	At3g57930	unknown protein	C.G.	S.X.	Please select
0.30	1e-39	165	Oryza sativa	Os07g0641700	AK122129.1	-	10 kDa chaperonin (Protein CPN10) (Protein groES)	8e-2	At3g22070	proline-rich family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	4e-2	40	Populus trichocarpa	Ptp.6374.1.S1_a_at	CV236991	hypothetical protein	-	3e-4	At1g14980	CPN10 (CHAPERONIN 10)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	2e-19	97	Triticum aestivum	Ta.13043.1.S1_x_at	CA617125	-	-	1e-3	At1g14980	CPN10 (CHAPERONIN 10)	C.G.	S.X.	Please select
0.06	4e-5	48	Vitis vinifera	1616067_at	CF415216	hypothetical protein LOC100264459	-	9e-7	At1g14980	CPN10 (CHAPERONIN 10)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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