Gene omics information

Query gene ID	Zm.4664.3.S1_x_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.4664.3.S1_x_at	AY108266.1	-	-	4e+0	At5g65070	MAF4 (MADS AFFECTING FLOWERING 4)	S.X.	H.G.	Please select
0.77	92.1	Zm.4666.1.A1_at	CK368897	LSM7-like	-	2e+0	At5g23290	PDF5 (PREFOLDIN 5)	S.X.	H.G.	Please select
0.77	92.1	Zm.5810.1.A1_at	BM380578	pop3 peptide	-	5e-4	At3g17210	HS1 (HEAT STABLE PROTEIN 1)	S.X.	H.G.	Please select
0.55	71.6	Zm.1973.1.S1_at	AY108179.1	hypothetical protein LOC100217077	-	5e-5	At1g12680	PEPKR2 (Phosphoenolpyruvate carboxylase-related kinase 2)	S.X.	H.G.	Please select
0.50	65.7	Zm.4406.2.A1_at	AI881215	-	-	8e-4	At1g34790	TT1 (transparent testa 1)	S.X.	H.G.	Please select
0.44	55.7	Zm.3136.1.A1_at	CF625170	hypothetical protein LOC100192461	-	9e-66	At4g13930	SHM4 (serine hydroxymethyltransferase 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.2	99.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.8	99.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.3	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.9	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.4	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.3	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.6	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1106	Zm.4664.3.A1_a_at	AY108266.1	fatty acid elongase	-	4e+0	At5g65070	MAF4 (MADS AFFECTING FLOWERING 4)	C.G.	S.X.	Please select
1.00	0	1106	Zm.4664.3.A1_x_at	AY108266.1	-	-	4e+0	At5g65070	MAF4 (MADS AFFECTING FLOWERING 4)	C.G.	S.X.	Please select
1.00	0	1106	Zm.4664.3.S1_at	AY108266.1	-	-	4e+0	At5g65070	MAF4 (MADS AFFECTING FLOWERING 4)	C.G.	S.X.	Please select
0.26	3e-147	519	Zm.4664.1.A1_at	AI737885	fatty acid elongase	-	2e-1	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	C.G.	S.X.	Please select
0.04	5e-7	54	Zm.15850.1.S1_at	BM381062	metallothionein-like protein type 2	-	4e-7	At3g09390	MT2A (METALLOTHIONEIN 2A)	C.G.	S.X.	Please select
0.04	8e-3	40	Zm.4210.1.S1_at	BM078256	bundle sheath defective protein 2	-	4e-1	At3g13430	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	3e-2	38	Zm.4077.2.A1_at	BG266548	-	-	1e-9	At1g62450	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please select
0.04	3e-2	38	Zm.4077.2.A1_a_at	BG266548	rho GDP-dissociation inhibitor 1	-	1e-9	At1g62450	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please select
0.04	3e-2	38	Zm.4077.2.A1_x_at	BG266548	rho GDP-dissociation inhibitor 1	-	1e-9	At1g62450	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At5g65070	836631	MAF4 (MADS AFFECTING FLOWERING 4)	Encodes MADS-box containing FLC paralog. Five splice variants have been identified but not characterized with respect to expression patterns and/or differing function. Overexpression of the gene in the Landsberg ecotype leads to a delay in flowering, transcript levels of MAF4 are reduced after a 6 week vernalization.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	HgAffx.8751.1.S1_at	CB379750	-	-	2e-1	At2g31945	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	34	Hordeum vulgare	Contig2666_s_at	Contig2666	-	-	3e-29	At1g14400	UBC1 (UBIQUITIN CARRIER PROTEIN 1)	C.G.	S.X.	Please select
0.15	1e-78	293	Oryza sativa	Os10g0416200	AK073016.1	-	Naringenin-chalcone synthase family protein	1e-3	At2g26640	KCS11 (3-KETOACYL-COA SYNTHASE 11)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.140071.1.A1_at	CV273813	-	-	3e+0	At5g16110	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	5e-40	165	Triticum aestivum	TaAffx.120832.1.S1_at	BJ276980	-	-	2e-1	At5g43760	KCS20 (3-KETOACYL-COA SYNTHASE 20)	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1616528_s_at	CD801342	hypothetical protein LOC100242887	-	2e+0	At2g25710	HCS1 (HOLOCARBOXYLASE SYNTHASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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