Gene omics information

Query gene ID	Zm.4662.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.4662.1.A1_at	BG266353	-	-	1e-1	At2g21060	ATGRP2B (GLYCINE-RICH PROTEIN 2B)	S.X.	H.G.	Please select
0.36	41.3	Zm.117.1.S1_at	AI834548	iojap striping1	-	7e-1	At3g12930	-	S.X.	H.G.	Please select
0.11	5.3	Zm.1067.1.A1_at	BM267163	V-type H+-ATPase	-	3e-70	At1g75630	AVA-P4	S.X.	H.G.	Please select
0.11	5.3	Zm.18949.1.A1_at	CO533095	hypothetical protein LOC100280231	-	4e-2	At4g37550	formamidase, putative / formamide amidohydrolase, putative	S.X.	H.G.	Please select
0.10	4.6	Zm.4434.1.S1_at	CA402082	-	-	2e+0	At4g10925	F-box family protein	S.X.	H.G.	Please select
0.09	4.0	Zm.5616.1.A1_at	CK368985	threonine endopeptidase	-	2e+0	At4g12270	copper amine oxidase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.4	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM206309	Lower pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	8e-10	63	Zm.9130.1.A1_at	BM268570	-	-	7e-2	At3g62220	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.04	2e-7	56	Zm.8505.1.A1_at	AY107567.1	-	-	1e-4	At1g51870	protein kinase family protein	C.G.	S.X.	Please select
0.03	7e-7	54	Zm.2220.4.A1_a_at	AY110053.1	Hypothetical protein LOC100216733	-	1e-1	At5g16500	protein kinase family protein	C.G.	S.X.	Please select
0.03	7e-7	54	Zm.2220.4.S1_at	AY110053.1	hypothetical protein LOC100216733	-	1e-1	At5g16500	protein kinase family protein	C.G.	S.X.	Please select
0.02	7e-7	54	Zm.2220.3.S1_at	CA826703	hypothetical protein LOC100273713	-	9e-4	At3g55450	protein kinase, putative	C.G.	S.X.	Please select
0.02	5e-5	48	Zm.8941.1.A1_at	BM334004	hypothetical protein LOC100273259	-	2e-1	At5g02230	haloacid dehalogenase-like hydrolase family protein	C.G.	S.X.	Please select
0.03	5e-5	48	Zm.6800.1.A1_at	AI691347	-	-	8e-2	At3g20530	protein kinase family protein	C.G.	S.X.	Please select
0.03	5e-5	48	Zm.15027.1.A1_at	BM268637	catalytic/ hydrolase	-	7e+0	At3g62040	catalytic/ hydrolase	C.G.	S.X.	Please select
0.03	3e-3	42	Zm.7753.1.A1_at	BM337798	hypothetical protein LOC100191438	-	3e-2	At2g48010	RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	38	Arabidopsis thaliana	At2g21060	816641	ATGRP2B (GLYCINE-RICH PROTEIN 2B)	glycine-rich protein (AtGRP2b)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	9e-3	42	Glycine max	GmaAffx.92535.1.S1_at	CF808260	-	-	6e-2	At1g26970	protein kinase, putative	C.G.	S.X.	Please select
0.37	6e-60	230	Hordeum vulgare	Contig24077_at	Contig24077	-	-	1e+0	At1g48480	RKL1	C.G.	S.X.	Please select
0.19	3e-77	289	Oryza sativa	Os08g0276400	AK102100.1	-	Protein kinase domain containing protein	3e-8	At2g24230	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	4e-2	40	Populus trichocarpa	PtpAffx.214857.1.S1_at	pmrna28761	hypothetical protein	-	9e-2	At3g20530	protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.47	2e-74	280	Triticum aestivum	TaAffx.70444.1.A1_at	CD492068	-	-	1e+0	At5g02800	protein kinase family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1616189_at	CF511570	hypothetical protein LOC100260741	-	6e-18	At1g75820	CLV1 (CLAVATA 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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