Gene omics information

Query gene ID	Zm.4625.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.4625.1.A1_at	AI737394	-	-	8e-1	At1g78630	emb1473 (embryo defective 1473)	S.X.	H.G.	Please select
0.91	99.0	ZmAffx.786.1.A1_at	AI759096	-	-	3e-3	At1g72450	JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)	S.X.	H.G.	Please select
0.67	85.8	Zm.8375.1.A1_at	BM080176	-	-	2e-2	At5g25450	ubiquinol-cytochrome C reductase complex 14 kDa protein, putative	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.925.1.S1_at	AI795348	-	-	8e-1	At1g43171	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.9555.2.A1_at	CK347442	-	-	3e+0	At2g22241	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.9891.1.A1_at	BM350582	-	-	1e+0	At5g27290	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.4	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.7	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e-2	36	Zm.16855.1.A1_at	AF036949.1	liguleless2	-	1e-3	At5g06950	AHBP-1B	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.5591.1.S1_at	CD435593	hypothetical protein LOC100273390	-	4e-17	At4g30620	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.17277.1.S1_at	CF273093	-	-	1e-45	At5g57110	ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.8306.1.A1_at	BM073602	-	-	3e-4	At5g01960	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.7010.2.A1_at	AY106286.1	-	-	1e-5	At1g56110	NOP56 (Arabidopsis homolog of nucleolar protein Nop56)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.6642.1.S1_at	CD437363	PL5L15	-	2e-1	At1g12410	CLP2 (CLP PROTEASE PROTEOLYTIC SUBUNIT 2)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.5966.1.A1_at	BG268635	-	-	3e-5	At2g14740	ATVSR3 (ARABIDOPSIS THALIANA VACULOLAR SORTING RECEPTOR 3)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.5892.1.A1_at	BM267559	propionyl-CoA carboxylase beta chain	-	3e-11	At4g34030	MCCB (3-METHYLCROTONYL-COA CARBOXYLASE)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.5984.1.A1_at	AI666042	-	-	1e+0	At5g53830	VQ motif-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-1	34	Arabidopsis thaliana	At1g78630	844199	emb1473 (embryo defective 1473)	F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:thylakoid, ribosome, chloroplast, chloroplast stroma;BOMFAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	HgAffx.5922.1.S1_at	CB826289	-	-	5e+0	At5g51620	-	C.G.	S.X.	Please select
0.10	3e-5	48	Hordeum vulgare	Contig20248_at	Contig20248	-	-	5e+0	At3g16880	F-box protein-related	C.G.	S.X.	Please select
0.06	6e-3	42	Oryza sativa	Os04g0434600	AK062857.1	-	Kinesin, motor region domain containing protein	1e+0	At3g17470	RelA/SpoT domain-containing protein / calcium-binding EF-hand family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.217501.1.S1_s_at	pmrna32788	hypothetical protein	-	8e-7	At1g22540	proton-dependent oligopeptide transport (POT) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e+1	30	Triticum aestivum	TaAffx.50937.1.S1_at	CA733236	-	-	7e-1	At4g16240	unknown protein	C.G.	S.X.	Please select
0.03	9e-1	32	Vitis vinifera	1616131_at	CB973358	similar to Os01g0104000	-	1e+0	At1g11470	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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