Gene omics information

Query gene ID	Zm.4618.1.A1_at
Gene name	pre-mRNA-splicing factor ISY1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.4618.1.A1_at	AW066311	pre-mRNA-splicing factor ISY1	-	4e-7	At3g18790	-	S.X.	H.G.	Please select
0.67	85.8	Zm.14052.1.A1_at	CF036019	hypothetical protein LOC100272508	-	3e-17	At2g22400	NOL1/NOP2/sun family protein	S.X.	H.G.	Please select
0.63	81.1	Zm.10865.1.A1_at	CF638037	hypothetical protein LOC100275271	-	1e-6	At2g44090	-	S.X.	H.G.	Please select
0.61	79.5	Zm.1047.1.S1_at	CB381142	hypothetical protein LOC100277178	-	1e+0	At1g10865	-	S.X.	H.G.	Please select
0.60	77.8	Zm.264.2.A1_x_at	CF012670	acetyl-coenzyme A carboxylase	-	8e+0	At5g02890	transferase family protein	S.X.	H.G.	Please select
0.57	75.1	Zm.24.2.S1_at	AJ001635.1	viviparous1	-	3e+0	At2g40765	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.3611.1.S1_at	CA403298	choline-phosphate cytidylyltransferase B	-	2e-22	At4g15130	catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.9	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e-2	38	Zm.5932.1.S1_at	AB071695.1	response regulator 10	-	3e-1	At2g01760	ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.12742.1.A1_at	CD440044	prefoldin subunit 2	-	1e-1	At1g68490	unknown protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.9851.1.A1_at	BM380606	-	-	4e-1	At4g18160	KCO6	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.5799.1.A1_at	AI649714	gamma-tocopherol methyltransferase	-	8e-13	At1g64970	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.549.1.A1_at	AF244686.1	glutathione S-transferase GST 21	-	2e+0	At2g09840	-	C.G.	S.X.	Please select
0.03	3e+0	32	Zm.3740.1.A1_at	BG840857	22.0 kDa class IV heat shock protein	-	1e-1	At4g24240	WRKY7	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.370.1.S1_at	AF023159.1	starch synthase DULL1	-	1e-21	At1g11720	ATSS3 (starch synthase 3)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.15915.1.S1_at	AI964614	-	-	3e-7	At2g45770	CPFTSY	C.G.	S.X.	Please select
0.03	1e+1	30	ZmAffx.793.1.A1_at	AI770322	-	-	8e-1	At1g64890	integral membrane transporter family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	4e-7	56	Arabidopsis thaliana	At3g18790	821412	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.11	1e-1	38	Glycine max	GmaAffx.55466.1.S1_at	BM271288	-	-	1e-15	At3g18790	-	C.G.	S.X.	Please select
0.19	6e-20	97	Hordeum vulgare	Contig17681_at	Contig17681	-	-	1e-3	At3g18790	-	C.G.	S.X.	Please select
0.20	1e-36	155	Oryza sativa	Os02g0602500	AK064340.1	-	Isy1-like splicing family protein	5e-8	At3g18790	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	9e-3	42	Populus trichocarpa	PtpAffx.53822.1.S1_at	CV270700	-	-	3e-12	At5g64813	LIP1 (Light Insensitive Period1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	9e-27	121	Triticum aestivum	Ta.25969.1.S1_at	CD454010	-	-	4e-8	At3g18790	-	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1615398_at	CB348091	hypothetical protein LOC100254579	-	2e-1	At1g29420	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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