Gene omics information

Query gene ID	Zm.4603.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.88	96.7	Zm.4603.1.S1_at	CK827754	-	-	4e-3	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	S.X.	H.G.	Please select
0.50	65.7	Zm.463.1.A1_at	U95953.1	viviparous14	-	5e-6	At3g14440	NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3)	S.X.	H.G.	Please select
0.49	61.9	Zm.2749.1.A1_at	AW067078	-	-	8e-5	At3g18080	BGLU44 (B-S GLUCOSIDASE 44)	S.X.	H.G.	Please select
0.44	55.7	Zm.4209.1.A1_at	CA405195	hypothetical protein LOC100191198	-	2e-5	At5g37370	ATSRL1	S.X.	H.G.	Please select
0.42	51.3	Zm.13581.1.A1_at	BM379129	-	-	2e-4	At5g65460	kinesin motor protein-related	S.X.	H.G.	Please select
0.41	49.7	Zm.12997.2.S1_at	BF728194	-	-	6e-10	At3g46740	TOC75-III (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 75-III)	S.X.	H.G.	Please select
0.40	48.5	Zm.2810.1.S1_at	CK371548	calcitonin peptide-receptor component protein	-	7e-1	At1g18170	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	S.X.	H.G.	Please select
0.38	44.2	Zm.6354.2.A1_at	CF569014	hypothetical protein LOC100192793	-	7e-1	At2g45250	unknown protein	S.X.	H.G.	Please select
0.37	42.3	Zm.6293.1.A1_at	CF038760	hypothetical protein LOC100216905	-	4e+0	At5g08400	unknown protein	S.X.	H.G.	Please select
0.36	41.3	Zm.17585.1.S1_at	AI467721	palmitoyltransferase ZDHHC20	-	1e-11	At4g22750	zinc finger (DHHC type) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.6	98.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
12.6	98.7	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
11.3	98.5	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
10.4	98.4	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.5	98.1	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.9	97.7	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.9	97.7	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.4	97.5	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.2	97.4	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.5	97.1	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	3e-73	276	Zm.13942.1.A1_at	CF637457	hypothetical protein LOC100279675	-	2e-6	At4g00585	unknown protein	C.G.	S.X.	Please select
0.21	6e-68	258	Zm.1798.1.A1_a_at	BE519060	-	-	2e+0	At2g35430	zinc finger (CCCH-type) family protein	C.G.	S.X.	Please select
0.13	3e-39	163	Zm.17987.1.A1_at	BM348784	hypothetical protein LOC100275447	-	2e-2	At4g00585	unknown protein	C.G.	S.X.	Please select
0.08	3e-17	89	Zm.11647.1.A1_at	CO532634	hypothetical protein LOC100193107	-	3e-14	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select
0.12	5e-10	65	Zm.14147.1.A1_at	CD432997	hypothetical protein LOC100273349	-	6e-13	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select
0.02	4e-1	36	ZmAffx.976.1.A1_at	AI833931	-	-	1e-2	At4g23880	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	36	ZmAffx.976.1.S1_at	AI833931	-	-	1e-2	At4g23880	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.8493.1.S1_at	BM074400	hypothetical protein LOC100272804	-	1e-1	At1g75700	HVA22G (HVA22-LIKE PROTEIN G)	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.1058.2.A1_at	BM079078	-	-	3e-11	At4g26910	2-oxoacid dehydrogenase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-3	44	Arabidopsis thaliana	At1g75950	843928	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	SKP1 is core component of the SCF family of E3 ubiquitin ligases and serves to tether the rest of the complex to an F-box protein, which provides specificity in binding to ubiquitin ligase substrate proteins. Predominately expressed from leptotene to pachytene. Negatively regulates recombination. Interacts with P0, a silencing suppressor protein encoded by poleroviruses by means of a conserved minimal F-box motif.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	1e-3	46	Glycine max	Gma.3293.1.S1_at	CD390735	-	-	5e-23	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select
0.14	6e-25	115	Hordeum vulgare	Contig1591_s_at	Contig1591	-	-	2e-12	At1g75950	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select
Os12g0570700	0.18	2e-25	Oryza sativa	Os02g0101600	CB967135	-	SKP1 component family protein	2e-17	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	C.G.	S.X.	Please select
0.03	3e-1	38	Populus trichocarpa	Ptp.5877.1.S1_at	CV233660	hypothetical protein	-	6e-34	At5g42190	ASK2 (ARABIDOPSIS SKP1-LIKE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.18	8e-57	222	Triticum aestivum	Ta.17720.2.S1_at	CA625568	-	-	1e-6	At4g00585	unknown protein	C.G.	S.X.	Please select
0.05	1e-3	44	Vitis vinifera	1617215_at	CB913948	hypothetical protein LOC100258376	-	3e-11	At4g00585	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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