Gene omics information

Query gene ID	Zm.4595.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.4595.1.A1_at	AI737265	-	-	4e-1	At1g30190	unknown protein	S.X.	H.G.	Please select
0.91	99.0	Zm.4592.1.A1_at	BM348651	hypothetical protein LOC100275868	-	8e+0	At5g39690	ANAC093 (Arabidopsis NAC domain containing protein 93)	S.X.	H.G.	Please select
0.83	95.6	Zm.18325.1.S1_at	CO530408	lipid binding protein	-	2e+0	At5g02560	HTA12	S.X.	H.G.	Please select
0.67	85.8	Zm.14536.1.A1_at	AY187719.1	SET domain protein SDG117	-	5e-1	At1g55260	lipid binding	S.X.	H.G.	Please select
0.55	71.6	Zm.4596.1.A1_at	CF636987	lipoxygenase	-	4e-1	At5g17670	hydrolase, acting on ester bonds	S.X.	H.G.	Please select
0.44	55.7	Zm.17280.1.S1_at	CK369569	-	-	7e-2	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.3	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e+0	32	Zm.6593.1.S1_at	CO527833	-	-	4e-3	At4g22890	PGR5-LIKE A	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.4336.1.S1_at	CA403908	hypothetical protein LOC100274309	-	4e+0	At5g38580	-	C.G.	S.X.	Please select
0.03	3e+0	32	Zm.3633.8.A1_at	AI881249	-	-	7e-29	At1g07890	APX1 (ascorbate peroxidase 1)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.3633.6.S1_at	CF005633	APx1 - Cytosolic Ascorbate Peroxidase	-	5e-29	At1g07890	APX1 (ascorbate peroxidase 1)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.3633.7.S1_at	CF048475	APx1 - Cytosolic Ascorbate Peroxidase	-	4e-29	At1g07890	APX1 (ascorbate peroxidase 1)	C.G.	S.X.	Please select
0.03	3e+0	32	Zm.3633.8.S1_x_at	AI881249	APx1 - Cytosolic Ascorbate Peroxidase	-	7e-29	At1g07890	APX1 (ascorbate peroxidase 1)	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.957.2.A1_at	CB381158	prefoldin subunit 6	-	1e-1	At2g35430	zinc finger (CCCH-type) family protein	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.7610.1.A1_at	BM079177	hypothetical protein LOC100279299	-	5e+0	At1g16060	ovule development protein, putative	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.7056.5.S1_at	AY108536.1	hypothetical protein LOC100272517	-	3e-15	At5g45390	CLPP4 (CLP PROTEASE P4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-1	36	Arabidopsis thaliana	At1g30190	839899	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	HgAffx.3707.1.A1_at	CK348983	-	-	7e-1	At5g41401	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Hordeum vulgare	Contig25178_at	Contig25178	-	-	3e-1	At5g40382	cytochrome-c oxidase	C.G.	S.X.	Please select
0.04	8e-1	36	Oryza sativa	Os11g0148700	AK066721.1	-	Zn-finger-like, PHD finger domain containingprotein	7e+0	At5g35210	peptidase M50 family protein / sterol-regulatory element binding protein (SREBP) site 2 protease family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	9e+0	32	Populus trichocarpa	PtpAffx.75789.1.A1_at	CV257346	-	-	6e-1	At2g18970	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	7e+0	32	Triticum aestivum	TaAffx.51905.1.S1_at	CA716652	-	-	3e+0	At3g25760	AOC1 (ALLENE OXIDE CYCLASE 1)	C.G.	S.X.	Please select
0.02	8e+0	30	Vitis vinifera	1615918_at	CD797632	hypothetical protein LOC100247805	-	3e+0	At5g19050	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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