Gene omics information

Query gene ID	Zm.457.1.S1_at
Gene name	ribosomal protein L29
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.457.1.S1_at	AF147725.1	ribosomal protein L29	-	2e+0	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	S.X.	H.G.	Please select
0.48	61.3	Zm.11832.1.S1_at	BM381116	hypothetical protein LOC100277564	-	1e-7	At1g57540	unknown protein	S.X.	H.G.	Please select
0.28	28.1	Zm.13617.1.A1_at	CF028226	hypothetical protein LOC100192113	-	2e-10	At2g47590	PHR2 (photolyase/blue-light receptor 2)	S.X.	H.G.	Please select
0.27	24.6	Zm.6478.1.S1_at	AI692059	-	-	4e-21	At1g09800	tRNA pseudouridine synthase family protein	S.X.	H.G.	Please select
0.20	14.2	Zm.17643.1.S1_at	CK368600	-	-	2e-1	At5g54850	unknown protein	S.X.	H.G.	Please select
0.16	9.4	Zm.4238.1.A1_at	BM073006	cleavage and polyadenylation specificity factor, 100 kDa subunit	-	8e-1	At2g14282	SCRL18 (SCR-Like 18)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.5	96.3	GSM253257	ZM_2d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.4	96.2	GSM253256	ZM_2d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
4.3	96.1	GSM253258	ZM_2d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
4.1	95.9	GSM253261	ZM_2d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.8	95.5	GSM253260	ZM_2d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
3.8	95.5	GSM253259	ZM_2d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.7	95.4	GSM253255	ZM_24h_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.7	95.4	GSM253263	ZM_4d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
3.6	95.2	GSM253252	ZM_24h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.6	95.2	GSM253250	ZM_24h_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	2e-177	621	Zm.15925.1.S1_at	AI395987	-	-	2e+0	At1g54215	proline-rich family protein	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.5206.2.S1_a_at	CD978008	hexokinase	-	4e-3	At4g29130	HXK1 (HEXOKINASE 1)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.17438.1.A1_at	CK347582	VP15	-	3e-1	At3g28970	AAR3 (antiauxin-resistant 3)	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.9411.1.S1_at	CA827391	SNF1-related protein kinase regulatory subunit beta-2	-	4e-1	At4g26150	CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1)	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.13182.1.A1_at	BG517765	-	-	1e-14	At4g24800	MA3 domain-containing protein	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.13052.1.S1_at	AY107104.1	indeterminate growth1	-	5e-6	At1g14580	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.03	8e-1	34	Zm.12118.1.A1_at	BQ034341	hypothetical protein LOC100277272	-	3e-1	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	C.G.	S.X.	Please select
0.02	3e+0	32	ZmAffx.781.1.A1_at	AI746268	-	-	1e+1	At4g37450	AGP18 (ARABINOGALACTAN PROTEIN 18)	C.G.	S.X.	Please select
0.02	3e+0	32	ZmAffx.781.1.S1_at	AI746268	-	-	1e+1	At4g37450	AGP18 (ARABINOGALACTAN PROTEIN 18)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At2g46330	819241	AGP16 (ARABINOGALACTAN PROTEIN 16)	Encodes arabinogalactan protein (AGP16).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	1e-14	81	Glycine max	Gma.17460.1.S1_s_at	CD400549	-	-	1e-3	At5g65220	ribosomal protein L29 family protein	C.G.	S.X.	Please select
0.43	4e-86	317	Hordeum vulgare	Contig9437_at	Contig9437	-	-	2e+0	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	C.G.	S.X.	Please select
0.24	5e-104	379	Oryza sativa	Os02g0754300	AK068621.1	-	-	9e-1	At4g10465	metal ion binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-1	36	Populus trichocarpa	PtpAffx.214261.1.S1_s_at	pmrna27749	hypothetical protein	-	5e+0	At5g24105	AGP41 (ARABINOGALACTAN-PROTEIN 41)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.59	0	793	Triticum aestivum	TaAffx.85202.1.S1_at	CA619121	-	-	1e+0	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1610171_at	CF511133	hypothetical protein LOC100263800	-	2e-2	At2g45100	RNA polymerase II transcription factor/ protein binding / transcription activator/ transcription regulator/ translation initiation factor/ zinc ion binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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