Gene omics information

Query gene ID	Zm.4560.2.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.4560.2.S1_at	AY106577.1	-	-	2e-11	At3g59350	serine/threonine protein kinase, putative	S.X.	H.G.	Please select
0.60	77.8	Zm.13815.1.S1_at	CF057002	Grx_C2.2 - glutaredoxin subgroup I	-	7e-3	At5g63030	glutaredoxin, putative	S.X.	H.G.	Please select
0.46	58.4	Zm.3885.1.S1_at	CK145224	Pectin methylesterase1	-	6e-2	At3g06830	pectinesterase family protein	S.X.	H.G.	Please select
0.46	58.4	Zm.6975.1.S1_at	AW066660	hypothetical protein LOC100272316	-	4e-40	At3g20050	ATTCP-1	S.X.	H.G.	Please select
0.40	48.5	Zm.14149.1.A1_at	AY111524.1	-	-	1e+0	At5g55135	unknown protein	S.X.	H.G.	Please select
0.32	33.4	Zm.2383.1.A1_at	BG842498	hypothetical protein LOC100275670	-	5e+0	At2g13820	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
39.9	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
38.5	99.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.6	99.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.2	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.8	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.0	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.3	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1203	Zm.4560.2.A1_a_at	AY106577.1	hypothetical protein LOC100273536	-	2e-11	At3g59350	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
1.00	0	1203	Zm.4560.2.A1_at	AY106577.1	hypothetical protein LOC100273536	-	2e-11	At3g59350	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.36	1e-128	458	Zm.4560.1.S1_at	AI734791	Pti1-like kinase-like	-	3e-47	At3g59350	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.4550.1.A1_at	AI734748	rac GTPase activating protein	-	2e-6	At3g11490	rac GTPase activating protein, putative	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.4644.1.S1_at	BM340641	-	-	2e-1	At5g06280	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.1288.3.A1_s_at	BM341259	Calreticulin2	-	2e-15	At1g09210	calreticulin 2 (CRT2)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.231.1.S1_at	CK827218	invertase2	-	3e-4	At1g62660	beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.2157.3.S1_a_at	CO521685	DNA binding protein	-	3e+0	At3g01700	AGP11	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.2157.3.A1_at	CO521685	-	-	3e+0	At3g01700	AGP11	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-11	69	Arabidopsis thaliana	At3g59350	825104	serine/threonine protein kinase, putative	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-2	40	Glycine max	GmaAffx.35632.1.A1_at	BE820527	-	-	8e-1	At2g04380	unknown protein	C.G.	S.X.	Please select
0.05	2e-6	52	Hordeum vulgare	Contig11158_at	Contig11158	-	-	6e-48	At2g30740	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.23	2e-62	240	Oryza sativa	Os03g0844100	AK067164.1	-	Pti1 kinase-like protein	6e-39	At3g59350	serine/threonine protein kinase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e+0	32	Populus trichocarpa	PtpAffx.30100.1.S1_at	CX174508	hypothetical protein	-	7e-2	At3g50690	leucine-rich repeat family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.18	7e-30	131	Triticum aestivum	Ta.7081.1.S1_at	BE515826	-	-	2e-32	At1g06700	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.04	2e-2	38	Vitis vinifera	1615460_at	CF405945	hypothetical protein LOC100249750	-	2e-91	At1g06700	serine/threonine protein kinase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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