CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.4529.1.A1_a_at

Gene name lipid binding protein

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 88.2 Zm.4529.1.A1_a_at CF624627 lipid binding protein - 4e-3 At5g40490 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.44 55.7 Zm.1838.1.A1_at CO526531 hypothetical protein LOC100276173 - 8e+0 At5g16010 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein S.X. H.G.
0.40 48.5 Zm.8850.1.A1_at CO533203 hypothetical protein LOC100272618 - 4e-2 At3g17940 aldose 1-epimerase family protein S.X. H.G.
0.23 18.6 ZmAffx.1173.1.A1_at AW787668 - - 3e+0 At3g47800 aldose 1-epimerase family protein S.X. H.G.
0.18 11.6 Zm.4745.1.A1_at AI739741 hypothetical protein LOC100194119 - 1e-3 At3g55350 unknown protein S.X. H.G.
0.13 6.8 Zm.13669.1.S1_x_at AY107043.1 - - 2e-1 At3g26420 ATRZ-1A S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.8 99.1 GSM206299 Left pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
17.3 99.1 GSM206324 Upper pulvinus 2 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
10.4 98.4 GSM206305 Right pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
10.0 98.4 GSM206287 Left pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
9.4 98.3 GSM206330 Lower pulvinus 2 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
9.3 98.2 GSM206312 Upper pulvinus 2 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
7.5 97.8 GSM206308 Lower pulvinus 15 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
6.9 97.7 GSM385709 Deep-sowing 10d treatment TIBA, biological rep1 GSE15371 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
6.9 97.7 GSM375788 Deep-sowing 10d treatment Control, biological rep1 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
6.5 97.5 GSM206303 Upper pulvinus 30 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 0 805 Zm.4529.2.S1_at BM333157 - - 8e+0 Atmg00050 - C.G. S.X.
0.34 6e-71 268 Zm.5254.1.A1_at BM379268 hypothetical protein LOC100279268 - 3e-1 At1g22450 COX6B (CYTOCHROME C OXIDASE 6B) C.G. S.X.
0.06 2e-15 83 Zm.3374.1.S1_at BM380917 - - 3e+0 At1g21864 - C.G. S.X.
0.08 2e-12 73 Zm.1754.1.A1_a_at CF624874 lipid binding protein - 5e+0 At3g03750 SET domain-containing protein C.G. S.X.
0.07 1e-10 67 Zm.16476.1.A1_at CO527154 lipid binding protein - 2e+1 At5g15600 SP1L4 (SPIRAL1-LIKE4) C.G. S.X.
0.03 7e-3 42 Zm.12389.1.S1_at AY104821.1 glycine-rich RNA-binding protein 7 - 6e-1 At4g13860 glycine-rich RNA-binding protein, putative C.G. S.X.
0.05 3e-2 40 Zm.6163.1.A1_at AI712204 - - 5e-1 At5g46730 glycine-rich protein C.G. S.X.
0.01 1e-1 38 Zm.18105.1.S1_at CO527288 narrow sheath1 - 2e-19 At2g28610 PRS (PRESSED FLOWER) C.G. S.X.
0.01 4e-1 36 Zm.1987.2.A1_at CK827168 hypothetical protein LOC100274612 - 1e+0 At2g36817 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 4e-3 44 Arabidopsis thaliana At5g40490 834047 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVA - - - C.G. S.X.
0.03 6e-3 44 Glycine max GmaAffx.82078.1.S1_at BI424683 - - 1e-27 At3g26420 ATRZ-1A C.G. S.X.
0.08 4e-17 89 Hordeum vulgare Contig7968_at Contig7968 - - 3e-1 At3g53980 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.39 1e-109 398 Oryza sativa Os06g0566100 AK059225.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e-1 At5g40490 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.13 6e-12 73 Populus trichocarpa PtpAffx.215182.1.S1_s_at pmrna29226 hypothetical protein - 2e-7 At1g17640 RNA recognition motif (RRM)-containing protein C.G. S.X.
0.33 1e-111 404 Triticum aestivum Ta.7150.1.S1_at BJ305494 - - 3e+0 At4g14300 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative C.G. S.X.
0.05 1e-6 54 Vitis vinifera 1607011_at CF514748 - - 3e-7 At1g17640 RNA recognition motif (RRM)-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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