Gene omics information

Query gene ID	Zm.45.1.A1_at
Gene name	glutamine synthetase5
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	90.3	Zm.45.1.A1_at	D14576.1	glutamine synthetase5	-	2e-51	At3g17820	ATGSKB6	S.X.	H.G.	Please select
0.60	77.8	Zm.10423.1.S1_at	CN844467	fatty acid desaturase8	-	6e-14	At5g05580	FAD8 (FATTY ACID DESATURASE 8)	S.X.	H.G.	Please select
0.58	75.1	Zm.2678.1.A1_at	BM339111	hypothetical protein LOC100193236	-	2e-1	At1g05180	AXR1 (AUXIN RESISTANT 1)	S.X.	H.G.	Please select
0.56	74.4	Zm.19237.1.A1_at	CA402877	hypothetical protein LOC100216898	-	2e-1	At3g49010	ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)	S.X.	H.G.	Please select
0.52	67.3	Zm.18474.1.A1_at	CO531196	hypothetical protein LOC100192651	-	6e+0	At5g61997	unknown protein	S.X.	H.G.	Please select
0.51	66.4	Zm.2713.2.S1_a_at	AI881541	-	-	1e-30	At5g60790	ATGCN1	S.X.	H.G.	Please select
0.45	56.4	Zm.3707.1.A1_at	AY107773.1	vacuolar cation/proton exchanger 2	-	1e-4	At3g13320	CAX2 (CATION EXCHANGER 2)	S.X.	H.G.	Please select
0.44	55.7	Zm.6439.2.A1_at	AI881500	eucaryotic initiation factor7	-	7e-14	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	S.X.	H.G.	Please select
0.44	55.7	Zm.10287.1.S1_at	BM736731	-	-	1e+0	At2g45250	unknown protein	S.X.	H.G.	Please select
0.43	52.8	Zm.12595.1.S1_at	BG266819	-	-	1e-7	At1g09620	ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.9	97.7	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.3	97.4	GSM206301	Upper pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.6	97.1	GSM206313	Upper pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.3	96.9	GSM206319	Lower pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.1	96.8	GSM206290	Upper pulvinus 15 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.9	96.7	GSM206311	Left pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.5	96.3	GSM206306	Lower pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.5	96.3	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.5	96.3	GSM206326	Upper pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.4	96.2	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	0	1015	Zm.46.1.A1_s_at	BM351264	glutamine synthetase4 /// glutamine synthetase5	-	3e-43	At3g17820	ATGSKB6	C.G.	S.X.	Please select
0.58	1e-176	619	Zm.15859.1.A1_at	D14578.1	glutamine synthetase	-	9e-22	At5g37600	ATGSR1	C.G.	S.X.	Please select
0.51	4e-164	577	Zm.107.1.S1_at	AY104270.1	glutamine synthetase2	-	2e-17	At3g17820	ATGSKB6	C.G.	S.X.	Please select
0.26	1e-93	343	Zm.3455.3.A1_at	BQ619345	glutamine synthetase	-	3e-14	At1g66200	ATGSR2	C.G.	S.X.	Please select
0.14	3e-14	79	Zm.3369.1.A1_at	BM379459	glutamine synthetase1	-	4e-55	At5g35630	GS2 (GLUTAMINE SYNTHETASE 2)	C.G.	S.X.	Please select
0.01	9e-2	38	Zm.10879.1.S1_at	AY109037.1	peroxidase 24	-	5e-2	At5g58400	peroxidase, putative	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.5558.3.S1_at	BQ539339	RNA binding protein	-	6e-2	At5g48650	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.342.2.A1_at	U65948.1	hypothetical protein LOC100193930 /// starch branching enzyme3	-	2e-82	At5g03650	SBE2.2 (starch branching enzyme 2.2)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.13619.1.A1_at	CF630917	hypothetical protein LOC100192497 /// serine/threonine-protein kinase SAPK2 /// serine/threonine-protein kinase SAPK2	-	1e-30	At4g33950	OST1 (OPEN STOMATA 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	2e-51	204	Arabidopsis thaliana	At3g17820	821050	ATGSKB6	encodes a cytosolic glutamine synthetase, the enzyme has low affinity with substrate ammonium	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.40	6e-27	123	Glycine max	Gma.2105.1.S1_at	BI424905	-	-	1e-92	At5g37600	ATGSR1	C.G.	S.X.	Please select
0.57	0	751	Hordeum vulgare	Contig1646_s_at	Contig1646	-	-	9e-19	At5g37600	ATGSR1	C.G.	S.X.	Please select
0.57	0	678	Oryza sativa	Os.12728.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.47	2e-97	357	Populus trichocarpa	Ptp.7575.1.S1_s_at	CV268151	hypothetical protein	-	7e-103	At5g37600	ATGSR1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.58	0	743	Triticum aestivum	TaAffx.143995.3.S1_s_at	AY491968	-	-	4e-33	At3g17820	ATGSKB6	C.G.	S.X.	Please select
0.32	7e-57	220	Vitis vinifera	1620767_at	BQ800601	glutamine synthetase	-	9e-47	At1g66200	ATGSR2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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