Gene omics information

Query gene ID	Zm.4469.1.S1_at
Gene name	hypothetical protein LOC100277258
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.4	Zm.4469.1.S1_at	AI734281	hypothetical protein LOC100277258	-	6e+0	At4g25200	ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)	S.X.	H.G.	Please select
0.40	48.5	Zm.10760.1.S1_at	BQ539428	hypothetical protein LOC100277122	-	9e-12	At1g33230	-	S.X.	H.G.	Please select
0.23	18.6	Zm.1126.1.A1_at	AI691779	hypothetical protein LOC100276330	-	2e+0	At3g51632	CPuORF44 (Conserved peptide upstream open reading frame 44)	S.X.	H.G.	Please select
0.22	16.9	Zm.2507.1.A1_at	AY109282.1	-	-	5e-1	At5g57780	-	S.X.	H.G.	Please select
0.10	4.6	Zm.5963.2.S1_a_at	BM347324	hypothetical protein LOC100193106 /// hypothetical protein LOC100193568	-	3e-14	At3g62840	-	S.X.	H.G.	Please select
0.05	1.9	Zm.3170.1.A1_at	BM334818	-	-	3e+0	At5g16286	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.3	99.7	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
18.8	99.2	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
18.1	99.2	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
18.1	99.2	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
17.3	99.1	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
13.3	98.8	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
12.5	98.7	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
11.9	98.6	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
11.2	98.5	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
11.0	98.5	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	Zm.12133.1.S1_at	CF636936	nucleotide binding protein	-	1e-4	At4g35140	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.3184.1.A1_at	AY105651.1	gibberellin 20-oxidase	-	5e-2	At5g07200	YAP169	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.14469.1.A1_at	AY104124.1	anthranilate synthase alpha	-	6e-18	At2g29690	ASA2 (ANTHRANILATE SYNTHASE 2)	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.13089.1.S1_at	CA404283	-	-	2e-5	At5g18640	lipase class 3 family protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.1075.1.A1_at	AY103750.1	photosystem I reaction center subunit psaK	-	7e-9	At1g30380	PSAK (photosystem I subunit K)	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.10313.1.S1_at	AY082396.1	knotted1-interacting protein	-	2e-7	At2g16400	BLH7 (bell1-like homeodomain 7)	C.G.	S.X.	Please select
0.03	3e+0	32	ZmAffx.409.1.A1_at	AI676839	-	-	3e+0	At1g60470	AtGolS4 (Arabidopsis thaliana galactinol synthase 4)	C.G.	S.X.	Please select
0.03	3e+0	32	ZmAffx.409.1.S1_at	AI676839	-	-	3e+0	At1g60470	AtGolS4 (Arabidopsis thaliana galactinol synthase 4)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.9463.1.A1_at	BM336991	-	-	1e+0	At4g25740	40S ribosomal protein S10 (RPS10A)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e+0	32	Arabidopsis thaliana	At4g25200	828623	ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)	AtHSP23.6-mito mRNA, nuclear gene encoding mitochondrial	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-1	36	Glycine max	Gma.2347.2.S1_at	BE806651	-	-	5e-44	At3g20770	EIN3 (ETHYLENE-INSENSITIVE3)	C.G.	S.X.	Please select
0.03	2e-1	36	Hordeum vulgare	HY07K02u_at	HY07K02u	-	-	3e+0	At1g03730	unknown protein	C.G.	S.X.	Please select
0.18	4e-15	83	Oryza sativa	Os01g0180400	AK108226.1	-	Protein of unknown function DUF581 family protein	3e-2	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.65142.1.A1_at	CK093833	hypothetical protein	-	2e-3	At5g46020	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	3e-17	89	Triticum aestivum	TaAffx.66400.1.S1_at	CD881082	-	-	7e+0	At3g63210	MARD1	C.G.	S.X.	Please select
0.04	2e+0	32	Vitis vinifera	1622477_at	CF414040	hypothetical protein LOC100261452	-	4e-4	At3g22550	senescence-associated protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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