CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.4467.1.S1_at

Gene name hypothetical protein LOC100217081

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 95.6 Zm.4467.1.S1_at AW054142 hypothetical protein LOC100217081 - 1e-5 At1g36280 adenylosuccinate lyase, putative / adenylosuccinase, putative S.X. H.G.
0.62 79.8 Zm.537.1.A1_a_at AI065500 hypothetical protein LOC100194026 /// hypothetical protein LOC100273405 - 1e-55 At4g02930 elongation factor Tu, putative / EF-Tu, putative S.X. H.G.
0.54 69.8 Zm.2859.1.A1_a_at BM351067 alcohol dehydrogenase2 - 2e-11 At1g77120 ADH1 (ALCOHOL DEHYDROGENASE 1) S.X. H.G.
0.52 67.3 Zm.4077.2.A1_a_at BG266548 rho GDP-dissociation inhibitor 1 - 1e-9 At1g62450 Rho GDP-dissociation inhibitor family protein S.X. H.G.
0.50 65.7 Zm.1957.1.A1_at AY112028.1 COP9 signalosome complex subunit 8 - 3e-1 At5g37070 unknown protein S.X. H.G.
0.47 59.9 Zm.6437.2.A1_at AI691384 pre-mRNA-splicing factor ATP-dependent RNA helicase - 8e-1 At2g32820 - S.X. H.G.
0.44 55.7 Zm.12716.1.A1_at AY112283.1 - - 4e-1 At3g43583 unknown protein S.X. H.G.
0.43 52.8 Zm.5927.2.S1_at CD446230 Hypothetical protein LOC100194338 - 1e-38 At2g44350 ATCS S.X. H.G.
0.43 52.8 Zm.477.2.A1_at AI737865 hypothetical protein LOC100274928 - 2e-75 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) S.X. H.G.
0.41 49.7 Zm.7016.2.A1_x_at CF626808 - - 5e+0 At1g54500 rubredoxin family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.5 99.3 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.2 99.2 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1 99.2 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.3 99.1 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.9 99.1 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8 99.0 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3 98.9 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1 98.8 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4 98.8 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7 96.5 GSM320458 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.94 0 2668 Zm.4467.1.S1_a_at AW054142 hypothetical protein LOC100193777 - 1e-5 At1g36280 adenylosuccinate lyase, putative / adenylosuccinase, putative C.G. S.X.
0.36 3e-177 621 Zm.4467.2.A1_at AA979767 hypothetical protein LOC100193777 - 6e-9 At4g18440 adenylosuccinate lyase, putative / adenylosuccinase, putative C.G. S.X.
0.02 2e-2 40 Zm.12186.1.A1_at BM382225 - - 5e-1 At1g06160 ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) C.G. S.X.
0.01 6e+0 32 ZmAffx.976.1.A1_at AI833931 - - 1e-2 At4g23880 unknown protein C.G. S.X.
0.01 6e+0 32 ZmAffx.976.1.S1_at AI833931 - - 1e-2 At4g23880 unknown protein C.G. S.X.
0.01 6e+0 32 Zm.721.1.A1_at BM267834 Salt-inducible putative protein serine/threonine/tyrosine kinase - 1e-33 At1g06700 serine/threonine protein kinase, putative C.G. S.X.
0.01 6e+0 32 Zm.5254.1.A1_at BM379268 hypothetical protein LOC100279268 - 3e-1 At1g22450 COX6B (CYTOCHROME C OXIDASE 6B) C.G. S.X.
0.01 6e+0 32 Zm.513.1.S1_at AF250050.1 retinoblastoma-related protein 1 - 2e-6 At3g12280 RBR1 (RETINOBLASTOMA-RELATED 1) C.G. S.X.
0.01 6e+0 32 Zm.513.1.S2_at AF007793.1 retinoblastoma-related protein 1 - 2e-6 At3g12280 RBR1 (RETINOBLASTOMA-RELATED 1) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 1e-5 52 Arabidopsis thaliana At1g36280 840534 adenylosuccinate lyase, putative / adenylosuccinase, putative F:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, catalytic activity;P:purine ribonucleotide biosynthetic process, purine base biosynthetic process, IMP biosynthetic process;C:chloroplast;BOMFAP - - - C.G. S.X.
0.18 1e-6 56 Glycine max GmaAffx.86903.1.S1_at BI941758 - - 3e-43 At1g36280 adenylosuccinate lyase, putative / adenylosuccinase, putative C.G. S.X.
0.50 9e-175 613 Hordeum vulgare Contig12090_at Contig12090 - - 2e-7 At1g36280 adenylosuccinate lyase, putative / adenylosuccinase, putative C.G. S.X.
0.52 2e-141 504 Oryza sativa Os03g0313600 AK067474.1 - Adenylosuccinate-AMP lyase (EC 4.3.2.2) 2e-14 At1g36280 adenylosuccinate lyase, putative / adenylosuccinase, putative C.G. S.X.
0.13 5e-6 54 Populus trichocarpa PtpAffx.3428.1.A1_a_at CV243646 hypothetical protein - 3e-24 At1g36280 adenylosuccinate lyase, putative / adenylosuccinase, putative C.G. S.X.
0.31 1e-104 381 Triticum aestivum TaAffx.113916.1.S1_at CA601471 - - 7e-5 At1g36280 adenylosuccinate lyase, putative / adenylosuccinase, putative C.G. S.X.
0.02 4e+0 32 Vitis vinifera 1621104_at CF568790 - - 7e-1 At5g21140 emb1379 (embryo defective 1379) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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