Gene omics information

Query gene ID	Zm.4467.1.S1_a_at
Gene name	hypothetical protein LOC100193777
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.4467.1.S1_a_at	AW054142	hypothetical protein LOC100193777	-	1e-5	At1g36280	adenylosuccinate lyase, putative / adenylosuccinase, putative	S.X.	H.G.	Please select
0.67	85.8	Zm.10105.1.A1_at	BM379807	-	-	5e+0	At4g11870	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.3613.1.A1_at	BG841007	hypothetical protein LOC100273532	-	4e-24	At5g10540	peptidase M3 family protein / thimet oligopeptidase family protein	S.X.	H.G.	Please select
0.46	58.4	Zm.564.1.S1_a_at	AF244704.1	glutathione S-transferase GST 39	-	3e-2	At2g36640	ATECP63 (EMBRYONIC CELL PROTEIN 63)	S.X.	H.G.	Please select
0.35	38.9	Zm.6131.1.S1_at	AY105213.1	hypothetical protein LOC100191528	-	7e-1	At1g74560	NRP1 (NAP1-RELATED PROTEIN 1)	S.X.	H.G.	Please select
0.21	15.5	Zm.2713.2.A1_at	AI881541	-	-	1e-30	At5g60790	ATGCN1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.7	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.7	97.2	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.5	97.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.4	96.2	GSM205370	B73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	2668	Zm.4467.1.S1_at	AW054142	hypothetical protein LOC100217081	-	1e-5	At1g36280	adenylosuccinate lyase, putative / adenylosuccinase, putative	C.G.	S.X.	Please select
0.36	3e-177	621	Zm.4467.2.A1_at	AA979767	hypothetical protein LOC100193777	-	6e-9	At4g18440	adenylosuccinate lyase, putative / adenylosuccinase, putative	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.12186.1.A1_at	BM382225	-	-	5e-1	At1g06160	ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)	C.G.	S.X.	Please select
0.01	6e+0	32	ZmAffx.976.1.A1_at	AI833931	-	-	1e-2	At4g23880	unknown protein	C.G.	S.X.	Please select
0.01	6e+0	32	ZmAffx.976.1.S1_at	AI833931	-	-	1e-2	At4g23880	unknown protein	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.721.1.A1_at	BM267834	Salt-inducible putative protein serine/threonine/tyrosine kinase	-	1e-33	At1g06700	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.5254.1.A1_at	BM379268	hypothetical protein LOC100279268	-	3e-1	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.513.1.S1_at	AF250050.1	retinoblastoma-related protein 1	-	2e-6	At3g12280	RBR1 (RETINOBLASTOMA-RELATED 1)	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.513.1.S2_at	AF007793.1	retinoblastoma-related protein 1	-	2e-6	At3g12280	RBR1 (RETINOBLASTOMA-RELATED 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	1e-5	52	Arabidopsis thaliana	At1g36280	840534	adenylosuccinate lyase, putative / adenylosuccinase, putative	F:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, catalytic activity;P:purine ribonucleotide biosynthetic process, purine base biosynthetic process, IMP biosynthetic process;C:chloroplast;BOMFAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	1e-6	56	Glycine max	GmaAffx.86903.1.S1_at	BI941758	-	-	3e-43	At1g36280	adenylosuccinate lyase, putative / adenylosuccinase, putative	C.G.	S.X.	Please select
0.50	9e-175	613	Hordeum vulgare	Contig12090_at	Contig12090	-	-	2e-7	At1g36280	adenylosuccinate lyase, putative / adenylosuccinase, putative	C.G.	S.X.	Please select
0.52	2e-141	504	Oryza sativa	Os03g0313600	AK067474.1	-	Adenylosuccinate-AMP lyase (EC 4.3.2.2)	2e-14	At1g36280	adenylosuccinate lyase, putative / adenylosuccinase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	5e-6	54	Populus trichocarpa	PtpAffx.3428.1.A1_a_at	CV243646	hypothetical protein	-	3e-24	At1g36280	adenylosuccinate lyase, putative / adenylosuccinase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	1e-104	381	Triticum aestivum	TaAffx.113916.1.S1_at	CA601471	-	-	7e-5	At1g36280	adenylosuccinate lyase, putative / adenylosuccinase, putative	C.G.	S.X.	Please select
0.02	4e+0	32	Vitis vinifera	1621104_at	CF568790	-	-	7e-1	At5g21140	emb1379 (embryo defective 1379)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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