Gene omics information

Query gene ID	Zm.4434.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.4434.1.S1_at	CA402082	-	-	2e+0	At4g10925	F-box family protein	S.X.	H.G.	Please select
0.73	89.9	Zm.2072.1.S1_at	BG842253	-	-	7e-1	At5g14260	SET domain-containing protein	S.X.	H.G.	Please select
0.46	58.4	Zm.3975.1.S1_at	AY104816.1	5a2 protein	-	2e+1	At5g20520	WAV2 (WAVY GROWTH 2)	S.X.	H.G.	Please select
0.44	55.7	Zm.19155.2.A1_x_at	CO526374	-	-	7e-9	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	S.X.	H.G.	Please select
0.40	48.5	Zm.5616.1.A1_at	CK368985	threonine endopeptidase	-	2e+0	At4g12270	copper amine oxidase family protein	S.X.	H.G.	Please select
0.36	41.3	Zm.9879.2.S1_at	CA404875	vignain	-	5e-5	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.1	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.0	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.4	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.4	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.4	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.3	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.4	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.7	99.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-3	42	Zm.8031.1.A1_at	BQ539285	-	-	9e-15	At1g08720	EDR1 (ENHANCED DISEASE RESISTANCE 1)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.4335.1.S1_at	AY591341.1	hypothetical LOC542170	-	1e-20	At2g18600	RUB1-conjugating enzyme, putative	C.G.	S.X.	Please select
0.04	9e-1	34	Zm.6103.3.S1_at	AI668289	-	-	8e-1	At1g21010	unknown protein	C.G.	S.X.	Please select
0.04	9e-1	34	Zm.6103.3.A1_at	AI668289	-	-	8e-1	At1g21010	unknown protein	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.5337.1.A1_at	BM079465	-	-	1e+0	At5g11440	CID5	C.G.	S.X.	Please select
0.01	9e-1	34	Zm.3719.1.A1_at	CK370903	-	-	3e-71	At3g20290	ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)	C.G.	S.X.	Please select
0.02	9e-1	34	Zm.11904.1.A1_at	CF634524	disease resistance response protein 206	-	1e+0	At4g17615	CBL1 (CALCINEURIN B-LIKE PROTEIN 1)	C.G.	S.X.	Please select
0.02	4e+0	32	ZmAffx.689.1.A1_at	AI737271	-	-	3e+0	At1g80500	-	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.6059.1.A1_at	CK368571	hypothetical protein LOC100279626	-	1e-16	At3g58560	endonuclease/exonuclease/phosphatase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At4g10925	826691	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-1	38	Glycine max	GmaAffx.78381.1.S1_at	BM891779	-	-	1e+0	At3g63230	unknown protein	C.G.	S.X.	Please select
0.40	4e-68	258	Hordeum vulgare	EBro08_SQ009_L23_at	EBro08_SQ009_L23	-	-	1e+0	At1g03650	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.21	2e-67	258	Oryza sativa	Os03g0247100	AK067733.1	-	Conserved hypothetical protein	2e-8	At3g60850	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.211472.1.S1_at	pmrna22482	hypothetical protein	-	2e-42	At3g60850	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	2e-4	48	Triticum aestivum	Ta.20100.1.A1_at	CA667092	-	-	2e+1	At5g59080	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1610406_at	AY156050.1	glutathione S-transferase 3	-	1e-2	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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