Gene omics information

Query gene ID	Zm.4426.1.A1_at
Gene name	hypothetical protein LOC100273544
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	55.7	Zm.4426.1.A1_at	CF017278	hypothetical protein LOC100273544	-	1e+0	At1g78020	senescence-associated protein-related	S.X.	H.G.	Please select
0.92	99.2	ZmAffx.225.1.S1_at	AI670237	-	-	1e+1	At5g09470	mitochondrial substrate carrier family protein	S.X.	H.G.	Please select
0.83	95.6	Zm.8110.1.A1_at	CF623866	hypothetical protein LOC100278802	-	3e-25	At5g49820	emb1879 (embryo defective 1879)	S.X.	H.G.	Please select
0.77	92.1	Zm.6306.2.A1_at	AI691326	Protein kinase catalytic domain	-	1e-10	At1g35670	ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2)	S.X.	H.G.	Please select
0.71	88.2	Zm.5989.1.A1_at	AI666066	-	-	3e-1	At4g24960	ATHVA22D	S.X.	H.G.	Please select
0.50	65.7	Zm.19299.1.A1_at	BM074654	-	-	4e-3	At4g09270	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.13523.1.A1_at	AY108425.1	-	-	6e-1	At5g59470	PQ-loop repeat family protein / transmembrane family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.8	98.1	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.3	98.0	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
7.0	97.7	GSM202318	B73xMo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.8	97.6	GSM202309	Mo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.5	97.5	GSM202322	B73x Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.3	97.4	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.2	97.4	GSM202314	Mo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.1	97.4	GSM206307	Lower pulvinus 5 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
6.1	97.4	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.8	97.2	GSM202324	Mo17xB73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	1e-63	242	Zm.5919.1.S1_at	AI795365	-	-	4e-2	At1g59750	ARF1 (AUXIN RESPONSE FACTOR 1)	C.G.	S.X.	Please select
0.06	4e-14	77	Zm.2903.1.A1_at	CF019919	hypothetical protein LOC100274564	-	9e-8	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	C.G.	S.X.	Please select
0.01	4e-2	38	Zm.5122.1.A1_at	AY103900.1	-	-	4e+0	At5g15200	40S ribosomal protein S9 (RPS9B)	C.G.	S.X.	Please select
0.04	4e-2	38	Zm.4931.1.A1_at	BM332329	hypothetical protein LOC100273501	-	3e-26	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.2574.1.A1_at	AY104948.1	hypothetical protein LOC100274571	-	6e-2	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.3090.1.S1_at	AY104155.1	hypothetical protein LOC100192770	-	2e-4	At4g27320	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.3090.1.S1_a_at	AY104155.1	hypothetical protein LOC100192770 /// USP family protein	-	2e-4	At4g27320	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.19194.1.A1_at	CO519708	-	-	1e-11	At3g10050	OMR1 (L-O-METHYLTHREONINE RESISTANT 1)	C.G.	S.X.	Please select
0.03	9e+0	30	ZmAffx.1072.1.A1_at	AI947637	-	-	1e-5	At1g55480	binding / protein binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At1g78020	844137	senescence-associated protein-related	F:unknown;P:unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	5e-7	56	Glycine max	Gma.7493.1.A1_at	BQ611096	-	-	4e-16	At4g23980	ARF9 (AUXIN RESPONSE FACTOR 9)	C.G.	S.X.	Please select
0.04	3e+0	32	Hordeum vulgare	HV_CEb0024B09r2_s_at	HV_CEb0024B09r2	-	-	1e-2	At3g16500	PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select
0.10	4e-33	143	Oryza sativa	Os12g0479400	AK067061.1	-	Transcriptional factor B3 family protein	3e-11	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	5e-7	56	Populus trichocarpa	Ptp.7770.2.S1_at	CV243041	-	-	1e-22	At1g59750	ARF1 (AUXIN RESPONSE FACTOR 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	8e-30	131	Triticum aestivum	Ta.15664.1.S1_at	CA486187	-	-	1e-7	At3g61830	ARF18 (AUXIN RESPONSE FACTOR 18)	C.G.	S.X.	Please select
0.12	1e-1	36	Vitis vinifera	1619716_at	CF519146	hypothetical protein LOC100263592	-	1e-21	At1g59750	ARF1 (AUXIN RESPONSE FACTOR 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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