Gene omics information

Query gene ID Zm.4406.1.A1_at
Gene name splicing factor, arginine/serine-rich 12
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9199.0Zm.4406.1.A1_atAI834053splicing factor, arginine/serine-rich 12-2e+0At2g26695binding / zinc ion bindingS.X.H.G.
0.7792.1Zm.1934.1.S1_s_atAW519956hypothetical protein LOC100216744 /// glycerophosphodiester phosphodiesterase-3e+0At1g62770invertase/pectin methylesterase inhibitor family proteinS.X.H.G.
0.5775.1Zm.9236.1.A1_atBM339258--8e-2At3g01860unknown proteinS.X.H.G.
0.5571.6Zm.17166.1.A1_atCK370745--4e+0At5g65730xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeS.X.H.G.
0.3336.0Zm.17374.2.A1_a_atCF637833--1e+0At3g43490zinc knuckle (CCHC-type) family proteinS.X.H.G.
0.3131.6Zm.5796.2.S1_atAY107655.1--3e-18At5g66420-S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
4.396.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.995.7GSM202298B73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.895.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.194.3GSM290553WS1 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.194.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.194.3GSM162266Wild type 2 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maize
2.993.8GSM290554WS2 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.993.8GSM290555CCR mutant M1 with array type maize from AffymetrixGSE11531Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.893.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.893.5GSM385707Deep-sowing 10d treatment IAA, biological rep1GSE15371Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.449e-93339Zm.4406.2.A1_atAI881215--8e-4At1g34790TT1 (transparent testa 1)C.G.S.X.
0.359e-93339Zm.4406.2.S1_atAI881215--8e-4At1g34790TT1 (transparent testa 1)C.G.S.X.
0.012e-136Zm.8973.1.S1_a_atCF058354hypothetical protein LOC100191732-2e-2At2g18770signal recognition particle bindingC.G.S.X.
0.027e-134Zm.6252.1.A1_atCF630074hypothetical protein LOC100273493-8e-9At1g76200unknown proteinC.G.S.X.
0.023e+032Zm.8614.1.A1_atBM341063--1e-1At4g01640-C.G.S.X.
0.023e+032Zm.6162.2.A1_atAI676924hypothetical protein LOC100272661-4e-5At1g62760invertase/pectin methylesterase inhibitor family proteinC.G.S.X.
0.023e+032Zm.6162.2.S1_atAI676924--4e-5At1g62760invertase/pectin methylesterase inhibitor family proteinC.G.S.X.
0.013e+032Zm.6043.1.A1_atAY110347.1hypothetical protein LOC100280181-9e-1At3g10730sad1/unc-84-like 2 family proteinC.G.S.X.
0.023e+032Zm.2245.2.A1_atCF634375hypothetical protein LOC100217191-2e-1At3g28070nodulin MtN21 family proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.032e+034Arabidopsis thalianaAt2g266952745562binding / zinc ion bindingF:binding, zinc ion binding;P:biological_process unknown;C:intracellular;MPOF---C.G.S.X.
0.054e-1169Glycine maxGmaAffx.47263.1.S1_atBI699428--8e-5At1g79200unknown proteinC.G.S.X.
0.038e-134Hordeum vulgareHX09G24r_atHX09G24r--3e+0At3g02555unknown proteinC.G.S.X.
0.406e-51202Oryza sativaOs02g0170200AK107753.1-Conserved hypothetical protein4e-1At4g08570heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedC.G.S.X.
0.042e+034Populus trichocarpaPtpAffx.205539.1.S1_x_atpmrna10958hypothetical protein-4e+0At5g25425glycine-rich proteinC.G.S.X.
0.401e-53210Triticum aestivumTa.9725.1.S1_atBJ274770--5e-1At5g28630glycine-rich proteinC.G.S.X.
0.032e+032Vitis vinifera1617126_atCB343670--1e+1At1g55310SR33C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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