Gene omics information

Query gene ID Zm.4405.1.A1_at
Gene name vacuolar sorting protein 4b
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.6381.1Zm.4405.1.A1_atBG841902vacuolar sorting protein 4b-5e+0At2g40790ATCXXS2 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1)S.X.H.G.
0.147.7Zm.12337.1.S1_atCN844316--4e+0At5g36662-S.X.H.G.
0.094.0Zm.12114.1.S1_atBM379167DNA-binding protein RAV1-1e-11At1g25560TEM1 (TEMPRANILLO 1)S.X.H.G.
0.083.4Zm.14571.1.S1_atCD976279hypothetical protein LOC100280272-4e+0At5g51910TCP family transcription factor, putativeS.X.H.G.
0.072.9Zm.8643.1.A1_atBM075043--6e+0At3g02290zinc finger (C3HC4-type RING finger) family proteinS.X.H.G.
0.010.3Zm.3999.1.S1_atCF024332hypothetical protein LOC100276811-3e+0At5g39860PRE1 (PACLOBUTRAZOL RESISTANCE1)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
7.697.9GSM206307Lower pulvinus 5 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinus
7.497.8GSM206309Lower pulvinus 30 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinus
6.797.6GSM206303Upper pulvinus 30 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinus
5.997.3GSM206302Upper pulvinus 15 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinus
5.997.3GSM206300Upper pulvinus 2 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinus
5.797.2GSM206308Lower pulvinus 15 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinus
5.396.9GSM206305Right pulvinus control polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinus
5.096.7GSM206304Upper pulvinus 60 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinus
4.996.7GSM206299Left pulvinus control polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinus
4.796.5GSM206306Lower pulvinus 2 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.333e-98357Zm.12751.1.S1_atCF635412--2e-48At2g27600SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)C.G.S.X.
0.011e-136Zm.10336.1.S1_atAF348413.1cytosolic aldehyde dehydrogenase RF2C-2e-2At3g24503ALDH2C4C.G.S.X.
0.025e-134Zm.18100.1.S1_atAI967288--8e-4At5g04740ACT domain-containing proteinC.G.S.X.
0.025e-134Zm.18100.1.S1_a_atAI967288--8e-4At5g04740ACT domain-containing proteinC.G.S.X.
0.025e-134Zm.16355.1.A1_atCF349220--2e-4At1g59740proton-dependent oligopeptide transport (POT) family proteinC.G.S.X.
0.025e-134Zm.13591.1.S1_atAY107788.1glutathione transferase42-2e+0At1g10370ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)C.G.S.X.
0.022e+032Zm.8557.1.A1_atBM336541--6e+0At5g13120peptidyl-prolyl cis-trans isomerase cyclophilin-type family proteinC.G.S.X.
0.022e+032Zm.3707.1.A1_atAY107773.1vacuolar cation/proton exchanger 2-1e-4At3g13320CAX2 (CATION EXCHANGER 2)C.G.S.X.
0.022e+032Zm.3481.1.A1_atBG841193hypothetical protein LOC100276774-2e+0At2g21660CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.035e+032Arabidopsis thalianaAt2g40790818676ATCXXS2 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1)Encodes a monocysteinic thioredoxin, thioredoxin in which the second cysteine of the redox site is replaced by a serine, with low disulfide reductase but efficient disulfide isomerase activity. It contains a large N-terminal extension with respect to the dicysteinic thioredoxins that is enriched with 8 cysteines and positively charged residues.---C.G.S.X.
0.135e-1065Glycine maxGma.8094.1.S1_atAW309295--4e-123At2g27600SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)C.G.S.X.
0.428e-59226Hordeum vulgareContig4849_s_atContig4849--1e-4At2g27600SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)C.G.S.X.
0.304e-48192Oryza sativaOs01g0141100AK062139.1-ATPase of the AAA+ class4e-52At2g27600SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)C.G.S.X.
0.072e+034Populus trichocarpaPtpAffx.282.2.S1_a_atCV231057hypothetical protein-7e-21At2g27600SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)C.G.S.X.
0.273e-51202Triticum aestivumTa.1709.1.S1_atCK208738--2e-53At2g27600SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)C.G.S.X.
0.036e+030Vitis vinifera1621523_atCB979315--2e+1At4g09670oxidoreductase family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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