Gene omics information

Query gene ID	Zm.4385.1.S1_at
Gene name	small nuclear ribonucleoprotein-associated protein B
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.4385.1.S1_at	BQ487047	small nuclear ribonucleoprotein-associated protein B	-	3e-15	At5g44500	small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative	S.X.	H.G.	Please select
0.73	89.9	Zm.4132.1.A1_at	CO529833	hypothetical protein LOC100276765	-	4e-14	At1g16520	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.11605.1.A1_at	BM379262	-	-	4e+0	At4g11930	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.9989.1.A1_at	BM332236	DNA binding protein	-	5e+0	At5g03090	unknown protein	S.X.	H.G.	Please select
0.47	59.9	Zm.3633.2.S1_x_at	CF634876	APx1 - Cytosolic Ascorbate Peroxidase	-	3e-28	At1g07890	APX1 (ascorbate peroxidase 1)	S.X.	H.G.	Please select
0.43	52.8	Zm.9984.1.A1_at	CO529085	Hypothetical protein LOC100217031	-	4e-4	At1g65000	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.1	98.0	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
7.0	97.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.9	97.3	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.7	97.2	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.6	97.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.81	0	1180	Zm.4747.1.S1_a_at	AY105845.1	small nuclear ribonucleoprotein-associated protein B	-	3e-9	At5g44500	small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative	C.G.	S.X.	Please select
0.37	9e-57	220	Zm.4747.2.A1_x_at	AI834605	small nuclear ribonucleoprotein-associated protein B	-	4e+0	At1g17160	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.26	9e-57	220	Zm.4747.2.S1_at	AI901713	-	-	4e+0	At1g17160	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.7953.1.A1_at	BM351733	acid phosphatase/vanadium-dependent haloperoxidase related	-	7e+0	At3g21610	-	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.5459.1.A1_at	CF243798	hypothetical protein LOC100216977	-	3e-9	At4g27040	VPS22	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.2366.1.A1_at	BG873911	ATPP2-A13	-	1e-5	At1g12710	AtPP2-A12 (Phloem protein 2-A12)	C.G.	S.X.	Please select
0.01	7e-2	38	ZmAffx.5.1.S1_at	AY372246.1	cellulose synthase catalytic subunit 12	-	4e-26	At5g17420	IRX3 (IRREGULAR XYLEM 3)	C.G.	S.X.	Please select
0.02	7e-2	38	Zm.19059.1.A1_at	CO521551	hypothetical protein LOC100193008	-	4e-1	At1g78170	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.818.2.A1_at	CO531833	Hypothetical protein LOC100216560	-	1e+1	At5g67490	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	3e-15	83	Arabidopsis thaliana	At5g44500	834477	small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative	F:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MPFBOVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.24	4e-31	137	Glycine max	GmaAffx.88242.1.S1_at	CA801928	-	-	2e-27	At4g20440	smB (small nuclear ribonucleoprotein associated protein B)	C.G.	S.X.	Please select
0.44	3e-94	345	Hordeum vulgare	Contig11093_at	Contig11093	-	-	3e-21	At4g20440	smB (small nuclear ribonucleoprotein associated protein B)	C.G.	S.X.	Please select
0.34	6e-123	442	Oryza sativa	Os07g0166600	AK109573.1	-	Hypothetical protein	9e-28	At4g20440	smB (small nuclear ribonucleoprotein associated protein B)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	7e-14	79	Populus trichocarpa	PtpAffx.9002.3.S1_s_at	CX185515	hypothetical protein	-	2e-42	At4g20440	smB (small nuclear ribonucleoprotein associated protein B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	4e-76	286	Triticum aestivum	Ta.7115.1.S1_a_at	CK205723	-	-	6e-26	At4g20440	smB (small nuclear ribonucleoprotein associated protein B)	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1609114_at	CF201212.1	-	-	3e+0	At5g39581	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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