Gene omics information

Query gene ID	Zm.4371.1.A1_at
Gene name	hypothetical protein LOC100217272
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.4371.1.A1_at	BG517913	hypothetical protein LOC100217272	-	3e-1	At5g22240	OFP10	S.X.	H.G.	Please select
0.80	94.0	Zm.14489.1.S1_at	BQ527929	MFS18 protein	-	1e+0	At5g67510	60S ribosomal protein L26 (RPL26B)	S.X.	H.G.	Please select
0.80	94.0	Zm.6054.1.A1_at	AW497492	-	-	3e+0	At5g25490	zinc finger (Ran-binding) family protein	S.X.	H.G.	Please select
0.77	92.1	Zm.4369.2.S1_at	CF016250	-	-	5e+0	At2g37590	Dof-type zinc finger domain-containing protein	S.X.	H.G.	Please select
0.55	71.6	Zm.14400.1.S1_at	AW000473	hypothetical protein LOC100191706	-	8e-52	At4g02720	unknown protein	S.X.	H.G.	Please select
0.53	69.1	Zm.5517.1.A1_at	BE051194	hypothetical protein LOC100273563	-	2e-1	At1g15740	leucine-rich repeat family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.0	97.7	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.1	96.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.9	95.7	GSM205366	B73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.8	95.5	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.7	95.4	GSM202309	Mo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.6	95.2	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.5	95.1	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
3.4	94.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	965	Zm.4371.1.A1_s_at	BG517913	hypothetical protein LOC100217272	-	3e-1	At5g22240	OFP10	C.G.	S.X.	Please select
0.48	0	688	Zm.5985.2.A1_at	AY104529.1	hypothetical protein LOC100217272	-	2e-34	At3g51270	ATP binding / catalytic/ protein serine/threonine kinase	C.G.	S.X.	Please select
0.48	0	688	Zm.5985.2.S1_at	AY104529.1	Hypothetical protein LOC100217272	-	2e-34	At3g51270	ATP binding / catalytic/ protein serine/threonine kinase	C.G.	S.X.	Please select
0.23	7e-31	133	Zm.17434.1.A1_at	CK347191	-	-	9e-1	At5g01340	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.16326.1.S1_at	CO523105	hypothetical protein LOC100274361	-	4e-9	At5g65990	amino acid transporter family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.9562.1.S1_at	D88452.1	aldehyde oxidase-2	-	4e-5	At5g20960	AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.6032.1.A1_at	AI668502	hypothetical protein LOC100192630	-	9e-1	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.15502.1.S1_at	CD436477	-	-	1e-2	At3g23900	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.04	8e+0	30	ZmAffx.655.1.A1_at	AI715083	-	-	8e-1	At4g31320	auxin-responsive protein, putative / small auxin up RNA (SAUR_C)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At5g22240	832284	OFP10	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e+0	32	Glycine max	PsAffx.CL2295Contig1_at	PsAffx.CL2295Contig1	-	-	1e+0	At5g64950	mitochondrial transcription termination factor-related / mTERF-related	C.G.	S.X.	Please select
0.08	3e-18	91	Hordeum vulgare	Contig2621_at	Contig2621	-	-	1e-18	At3g51270	ATP binding / catalytic/ protein serine/threonine kinase	C.G.	S.X.	Please select
0.11	4e-11	69	Oryza sativa	Os01g0888700	AK073376.1	-	Protein of unknown function RIO1 family protein	1e-21	At3g51270	ATP binding / catalytic/ protein serine/threonine kinase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.224285.1.S1_at	pmrna42696	extra response regulator	-	2e-1	At5g26594	ARR24 (Arabidopsis response regulator 24)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	2e-11	69	Triticum aestivum	Ta.16602.1.S1_x_at	CA609428	-	-	6e-7	At3g51270	ATP binding / catalytic/ protein serine/threonine kinase	C.G.	S.X.	Please select
0.03	5e+0	30	Vitis vinifera	1621168_at	CF208311	-	-	4e+0	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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