Gene omics information

Query gene ID	Zm.4359.2.A1_at
Gene name	EMB2756
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.4359.2.A1_at	AI795776	EMB2756	-	2e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.6023.1.S1_at	AY059648.1	alternative oxidase AOX3 precursor	-	1e-5	At1g32350	AOX1D (alternative oxidase 1D)	S.X.	H.G.	Please select
0.36	41.3	ZmAffx.1053.1.A1_at	AI881846	-	-	3e+0	At1g16240	SYP51 (SYNTAXIN OF PLANTS 51)	S.X.	H.G.	Please select
0.36	41.3	Zm.5132.1.A1_at	AY105555.1	calcium lipid binding protein-like	-	7e-1	At1g15320	unknown protein	S.X.	H.G.	Please select
0.18	11.6	Zm.19103.1.S1_at	CF625279	hypothetical protein LOC100193224	-	3e+0	At4g09490	RNase H domain-containing protein	S.X.	H.G.	Please select
0.15	8.6	Zm.11618.1.A1_at	BM379364	-	-	4e+0	At5g27910	NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.2	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.3	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.4	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	2117	Zm.4359.2.S1_at	AY111092.1	-	-	2e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.99	0	2117	Zm.4359.2.A1_a_at	AI795776	EMB2756	-	2e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.99	0	2117	Zm.4359.2.A1_x_at	AI795776	EMB2756	-	2e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.12	2e-69	262	Zm.4359.1.A1_at	AI737260	EMB2756	-	1e-14	At1g34550	EMB2756 (EMBRYO DEFECTIVE 2756)	C.G.	S.X.	Please select
0.22	3e-65	248	Zm.17158.1.A1_at	CF636674	-	-	5e+0	At5g01600	ATFER1	C.G.	S.X.	Please select
0.22	8e-57	220	Zm.18528.1.A1_at	CF630784	-	-	3e+0	At2g14095	unknown protein	C.G.	S.X.	Please select
0.20	8e-57	220	Zm.11789.1.S1_at	BM380783	-	-	3e-1	At2g17320	pantothenate kinase-related	C.G.	S.X.	Please select
0.19	8e-54	210	Zm.1631.1.S1_at	BF728966	-	-	4e+0	At3g22230	60S ribosomal protein L27 (RPL27B)	C.G.	S.X.	Please select
0.23	3e-50	198	Zm.17158.2.A1_at	BM267363	-	-	3e+0	At5g47455	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g52160	835292	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	8e-1	36	Glycine max	GmaAffx.81252.1.S1_at	BQ630085	-	-	1e-23	At4g09630	-	C.G.	S.X.	Please select
0.36	2e-134	478	Hordeum vulgare	Contig10959_at	Contig10959	-	-	4e-37	At4g09630	-	C.G.	S.X.	Please select
0.28	5e-74	280	Oryza sativa	Os11g0198100	AK070130.1	-	Protein of unknown function DUF616 family protein	3e-8	At1g34550	EMB2756 (EMBRYO DEFECTIVE 2756)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e+0	34	Populus trichocarpa	PtpAffx.5787.1.A1_at	CV234464	hypothetical protein	-	1e+0	At4g26370	antitermination NusB domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	2e-1	38	Triticum aestivum	Ta.18626.1.S1_at	CA641332	-	-	4e+0	At3g45851	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1616116_at	CF604141	hypothetical protein LOC100268134	-	2e-21	At5g20250	DIN10 (DARK INDUCIBLE 10)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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