Gene omics information

Query gene ID	Zm.4338.3.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.4338.3.S1_at	AW000126	-	-	3e+0	At5g27170	unknown protein	S.X.	H.G.	Please select
0.91	99.0	Zm.1402.1.S1_at	BF729248	-	-	4e+0	At1g29040	unknown protein	S.X.	H.G.	Please select
0.80	94.0	Zm.4350.1.A1_at	AW091239	-	-	1e+0	At5g49334	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.13325.1.S1_at	BQ279643	-	-	3e+0	At4g27140	2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1	S.X.	H.G.	Please select
0.37	42.3	Zm.13484.1.S1_at	AY108906.1	-	-	3e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	S.X.	H.G.	Please select
0.32	33.4	Zm.3875.1.S1_at	BQ539306	-	-	2e-31	At1g50200	ALATS (ALANYL-TRNA SYNTHETASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
47.6	100.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
35.4	99.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.4	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.4	99.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.9	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.8	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	700	Zm.4338.3.A1_at	AW000126	-	-	3e+0	At5g27170	unknown protein	C.G.	S.X.	Please select
0.04	8e-11	65	Zm.4338.1.A1_at	CF638243	peroxidase 72	-	1e-8	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	C.G.	S.X.	Please select
0.03	8e-11	65	Zm.4338.2.S1_at	AJ401274.1	peroxidase	-	9e-4	At4g16270	peroxidase 40 (PER40) (P40)	C.G.	S.X.	Please select
0.03	3e-1	34	Zm.9111.2.A1_a_at	BM266662	flavoprotein wrbA	-	3e-1	At4g27270	quinone reductase family protein	C.G.	S.X.	Please select
0.03	3e-1	34	Zm.9111.2.A1_x_at	BM266662	flavoprotein wrbA	-	3e-1	At4g27270	quinone reductase family protein	C.G.	S.X.	Please select
0.03	3e-1	34	Zm.3483.1.A1_at	BG842836	-	-	3e-30	At1g16720	HCF173 (high chlorophyll fluorescence phenotype 173)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.6219.1.A1_at	CK985949	-	-	6e+0	At4g29035	-	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.3656.2.S1_at	CF050698	hypothetical protein LOC100273489	-	4e-58	At5g64270	splicing factor, putative	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.3656.2.S1_a_at	CF050698	hypothetical protein LOC100273489	-	4e-58	At5g64270	splicing factor, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e+0	32	Arabidopsis thaliana	At5g27170	832775	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	GmaAffx.93559.1.S1_at	CF809284	-	-	4e+0	At3g50250	unknown protein	C.G.	S.X.	Please select
0.05	1e+0	32	Hordeum vulgare	HM05O11r_at	HM05O11r	-	-	5e-1	At2g17540	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	Oryza sativa	OsAffx.8320.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-1	36	Populus trichocarpa	PtpAffx.378.3.S1_at	BP928598	-	-	4e-3	At4g18360	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	2e-7	56	Triticum aestivum	TaAffx.112963.1.S1_at	CA619392	-	-	1e+0	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	C.G.	S.X.	Please select
0.06	3e+0	30	Vitis vinifera	1615048_at	CA816728	-	-	1e+0	At5g53588	CPuORF50 (Conserved peptide upstream open reading frame 50)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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