Gene omics information

Query gene ID	Zm.4336.1.S1_at
Gene name	hypothetical protein LOC100274309
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.4336.1.S1_at	CA403908	hypothetical protein LOC100274309	-	4e+0	At5g38580	-	S.X.	H.G.	Please select
0.80	94.0	Zm.6381.1.A1_at	CO534945	hypothetical protein LOC100273528	-	2e+0	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	S.X.	H.G.	Please select
0.80	94.0	Zm.1783.1.S1_at	AY109631.1	protein binding protein	-	1e+1	At5g24860	FPF1 (FLOWERING PROMOTING FACTOR 1)	S.X.	H.G.	Please select
0.73	89.9	Zm.6874.2.S1_at	CF637577	-	-	3e-3	At2g45430	DNA-binding protein-related	S.X.	H.G.	Please select
0.67	85.8	Zm.6872.1.A1_at	AI065521	-	-	2e+0	At1g27920	MAP65-8 (MICROTUBULE-ASSOCIATED PROTEIN 65-8)	S.X.	H.G.	Please select
0.40	48.5	Zm.6503.1.A1_at	CK370921	-	-	1e-1	At1g04445	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	97.5	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.1	97.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.1	96.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.1	96.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-1	38	Zm.155.2.S1_at	AY109498.1	-	-	4e-3	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.10262.1.S1_at	AF351191.1	-	-	8e-1	At5g55750	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.10262.1.S1_s_at	AF351191.1	-	-	8e-1	At5g55750	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.3118.1.S1_at	AY103914.1	hypothetical protein LOC100274547	-	9e-3	At2g37220	29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.5076.1.A1_at	AI600726	hypothetical protein LOC100193426	-	6e+0	At5g03170	FLA11	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.17498.1.A1_at	CK144816	hypothetical protein LOC100279562	-	1e+0	At5g62430	CDF1 (CYCLING DOF FACTOR 1)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.17248.3.A1_a_at	AW057073	hypothetical protein LOC100280404	-	7e-11	At5g37510	EMB1467 (embryo defective 1467)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.17248.3.A1_x_at	AW057073	hypothetical protein LOC100280404	-	7e-11	At5g37510	EMB1467 (embryo defective 1467)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.17248.3.S1_at	AW057073	Hypothetical protein LOC100191453	-	7e-11	At5g37510	EMB1467 (embryo defective 1467)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	4e+0	34	Arabidopsis thaliana	At5g38580	833847	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e+0	36	Glycine max	Gma.7398.1.S1_at	BI968547	-	-	9e-28	At2g28380	DRB2 (DSRNA-BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.07	2e-15	83	Hordeum vulgare	Contig17655_at	Contig17655	-	-	2e+0	At5g33355	-	C.G.	S.X.	Please select
0.45	7e-136	486	Oryza sativa	Os10g0480500	AK066524.1	-	Double-stranded RNA binding domain containingprotein	5e-3	At2g28380	DRB2 (DSRNA-BINDING PROTEIN 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.01	2e+0	36	Populus trichocarpa	PtpAffx.224058.1.S1_at	pmrna42293	hypothetical protein	-	4e-2	At3g60540	sec61beta family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	2e-14	81	Triticum aestivum	TaAffx.117665.1.S1_at	CA708244	-	-	4e+0	At1g77200	AP2 domain-containing transcription factor TINY, putative	C.G.	S.X.	Please select
0.01	1e-3	44	Vitis vinifera	1606658_at	CB981496	hypothetical protein LOC100242421 /// hypothetical protein LOC100249803	-	5e-26	At2g22870	EMB2001 (embryo defective 2001)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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