Gene omics information

Query gene ID	Zm.4328.1.A1_at
Gene name	hypothetical protein LOC100277618
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.4328.1.A1_at	AI711672	hypothetical protein LOC100277618	-	1e+0	At1g43580	unknown protein	S.X.	H.G.	Please select
0.28	28.1	Zm.34.4.A1_at	AI667842	-	-	9e-1	At4g32780	phosphoinositide binding	S.X.	H.G.	Please select
0.23	18.6	Zm.5612.1.A1_at	AY106400.1	L-galactose dehydrogenase	-	7e-10	At4g33670	L-galactose dehydrogenase (L-GalDH)	S.X.	H.G.	Please select
0.21	15.5	Zm.4820.1.A1_a_at	BG319643	hypothetical protein LOC100192684	-	1e-35	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	S.X.	H.G.	Please select
0.20	14.2	Zm.6381.1.A1_at	CO534945	hypothetical protein LOC100273528	-	2e+0	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	S.X.	H.G.	Please select
0.19	12.8	Zm.4522.1.S1_at	AI734575	hypothetical protein LOC100194076	-	4e-1	At1g56710	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	S.X.	H.G.	Please select
0.14	7.7	Zm.5318.1.A1_at	AI619197	-	-	5e-4	At5g13610	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.0	97.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM206302	Upper pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.6	96.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM206298	Lower pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.5	95.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM206292	Upper pulvinus 60 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	ZmAffx.80.1.A1_at	AI665268	hypothetical protein LOC100278886	-	3e+0	At2g07721	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	ZmAffx.80.1.S1_at	AI665268	-	-	3e+0	At2g07721	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	ZmAffx.149.1.A1_at	AI667835	-	-	3e+0	At3g10140	RECA3 (recA homolog 3)	C.G.	S.X.	Please select
0.03	2e+0	32	ZmAffx.149.1.S1_at	AI667835	-	-	3e+0	At3g10140	RECA3 (recA homolog 3)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.521.1.S1_at	AF200530.1	cellulose synthase6	-	1e-20	At2g21770	CESA9 (CELLULOSE SYNTHASE A9)	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.19066.1.S1_at	CD975063	-	-	1e-37	At2g02000	GAD3 (glutamate decarboxylase 3)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.17642.1.A1_at	CF038814	hypothetical protein LOC100193587	-	2e+0	At5g05370	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.11662.1.A1_at	BM379784	-	-	6e-1	At1g50930	unknown protein	C.G.	S.X.	Please select
0.03	8e+0	30	ZmAffx.794.1.S1_at	AI770336	-	-	8e-1	At3g21890	zinc finger (B-box type) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At1g43580	840942	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.91807.1.S1_at	CF807532	-	-	3e-7	At1g22330	RNA binding / nucleic acid binding / nucleotide binding	C.G.	S.X.	Please select
0.03	9e+0	30	Hordeum vulgare	HU07L18r_x_at	HU07L18r	-	-	2e+0	At3g07450	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.33	1e-57	224	Oryza sativa	Os04g0423700	CB096804	-	Conserved hypothetical protein	2e+0	At4g30510	AtATG18b	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-5	50	Populus trichocarpa	PtpAffx.275.1.S1_at	CF230131	hypothetical protein	-	1e-20	At1g43580	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	32	Triticum aestivum	TaAffx.32351.1.S1_at	CA596572	-	-	4e+0	At1g16510	auxin-responsive family protein	C.G.	S.X.	Please select
0.05	6e-3	40	Vitis vinifera	1613963_at	CD715583	-	-	2e-20	At1g43580	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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