Gene omics information

Query gene ID	Zm.4323.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	58.4	Zm.4323.1.S1_at	AY110219.1	-	-	2e+0	At1g49150	unknown protein	S.X.	H.G.	Please select
0.85	95.9	Zm.6103.3.S1_at	AI668289	-	-	8e-1	At1g21010	unknown protein	S.X.	H.G.	Please select
0.85	95.9	Zm.6916.1.S1_at	AW067358	hypothetical protein LOC100273981	-	9e-13	At5g66750	CHR1 (CHROMATIN REMODELING 1)	S.X.	H.G.	Please select
0.67	85.8	Zm.3657.1.A1_s_at	BG874068	-	-	1e+0	At5g42635	glycine-rich protein	S.X.	H.G.	Please select
0.67	85.8	Zm.6915.1.S1_at	AW256266	hypothetical protein LOC100280116	-	5e-1	At5g64160	unknown protein	S.X.	H.G.	Please select
0.61	79.5	Zm.12244.1.A1_at	AY105130.1	-	-	4e-8	At2g37500	arginine biosynthesis protein ArgJ family	S.X.	H.G.	Please select
0.61	79.5	Zm.2157.7.S1_at	CF019402	ribosomal protein S11	-	1e-38	At4g30800	40S ribosomal protein S11 (RPS11B)	S.X.	H.G.	Please select
0.58	75.1	Zm.16462.1.A1_at	AY347711.1	Xaa-His dipeptidase; X-His dipeptidase; beta-alanyl-histidine dipeptidase	-	7e+0	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	S.X.	H.G.	Please select
0.51	66.4	Zm.12150.2.S1_at	AI619383	hypothetical protein LOC100273319	-	9e-1	At4g31340	myosin heavy chain-related	S.X.	H.G.	Please select
0.43	52.8	Zm.7017.1.A1_at	BM072990	hypothetical protein LOC100272933	-	2e+0	At1g31760	SWIB complex BAF60b domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
46.3	100.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
36.9	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
33.7	99.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.2	99.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.8	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.5	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.6	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.86	0	1923	Zm.4323.1.A1_a_at	AY110219.1	hypothetical protein LOC100273955	-	2e+0	At1g49150	unknown protein	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.9389.3.A1_at	CF633932	-	-	4e+0	At5g43410	ethylene-responsive factor, putative	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.9389.3.A1_a_at	CF633932	catalytic/ protein phosphatase type 2C	-	4e+0	At5g43410	ethylene-responsive factor, putative	C.G.	S.X.	Please select
0.03	2e-1	36	Zm.9389.3.A1_x_at	CF633932	-	-	4e+0	At5g43410	ethylene-responsive factor, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.14497.13.A1_a_at	CB924237	hypothetical protein LOC100273745	-	4e-19	At1g07790	HTB1	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.14497.13.A1_x_at	CB924237	hypothetical protein LOC100273745	-	4e-19	At1g07790	HTB1	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.1088.1.S1_at	CK144992	ATP synthase gamma chain	-	7e-1	At1g11170	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.8525.1.A1_at	BM074538	pnFL-2	-	1e-1	At3g22275	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.4164.1.A1_x_at	BM079246	-	-	5e+0	At3g01860	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At1g49150	841338	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	8e-1	36	Glycine max	GmaAffx.42820.1.S1_at	CA783416	-	-	6e-5	At4g11350	transferase, transferring glycosyl groups	C.G.	S.X.	Please select
0.02	7e-2	38	Hordeum vulgare	Contig26236_at	Contig26236	-	-	1e-6	At1g76820	GTP binding / GTPase	C.G.	S.X.	Please select
0.08	1e-3	46	Oryza sativa	Os02g0771200	AK071059.1	-	-	3e+0	At1g68585	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	8e-1	36	Populus trichocarpa	PtpAffx.205081.1.S1_at	pmrna10072	hypothetical protein	-	9e-1	At4g24590	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-9	63	Triticum aestivum	TaAffx.25238.2.S1_at	CA640978	-	-	5e-1	At5g66170	-	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1618535_at	CA818656	hypothetical protein LOC100252930	-	4e+0	At5g62623	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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