Gene omics information

Query gene ID	Zm.4321.1.S1_at
Gene name	hypothetical protein LOC100191344
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	Zm.4321.1.S1_at	AI855098	hypothetical protein LOC100191344	-	2e-1	At3g51600	LTP5 (Lipid transfer protein 5)	S.X.	H.G.	Please select
0.73	89.9	Zm.4592.1.A1_at	BM348651	hypothetical protein LOC100275868	-	8e+0	At5g39690	ANAC093 (Arabidopsis NAC domain containing protein 93)	S.X.	H.G.	Please select
0.67	85.8	Zm.18325.1.S1_at	CO530408	lipid binding protein	-	2e+0	At5g02560	HTA12	S.X.	H.G.	Please select
0.67	85.8	Zm.14536.1.A1_at	AY187719.1	SET domain protein SDG117	-	5e-1	At1g55260	lipid binding	S.X.	H.G.	Please select
0.55	71.6	Zm.4596.1.A1_at	CF636987	lipoxygenase	-	4e-1	At5g17670	hydrolase, acting on ester bonds	S.X.	H.G.	Please select
0.44	55.7	Zm.17280.1.S1_at	CK369569	-	-	7e-2	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.7	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM375796	Deep-sowing 10d treatment GA3, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
6.5	97.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM375795	Deep-sowing 10d treatment Control, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
5.7	97.2	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-2	40	Zm.6782.1.A1_at	CF061901	hypothetical protein LOC100193477	-	5e-92	At5g16070	chaperonin, putative	C.G.	S.X.	Please select
0.01	7e-2	38	Zm.238.1.S1_at	CO523309	SBP-domain protein 4	-	4e-6	At1g02065	SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)	C.G.	S.X.	Please select
0.02	7e-2	38	Zm.17499.1.A1_at	CK145371	hypothetical protein LOC100279269	-	3e-1	At2g03230	-	C.G.	S.X.	Please select
0.02	3e-1	36	ZmAffx.727.1.A1_at	AI739989	-	-	3e+0	At2g04480	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	36	ZmAffx.727.1.S1_at	AI739989	-	-	8e-1	At3g26990	-	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.15442.1.A1_at	BM379425	Light-harvesting chlorophyll a/b binding protein	-	9e-37	At2g34420	LHB1B2	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.6513.2.S1_a_at	CF043636	-	-	2e-15	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.4520.1.A1_at	AY105466.1	hypothetical protein LOC100193274 /// hypothetical protein LOC100193631	-	1e-8	At2g35190	NPSN11 (NOVEL PLANT SNARE 11)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.4471.2.S1_at	CA401385	Pyruvate, orthophosphate dikinase1	-	5e-25	At4g15530	PPDK (pyruvate orthophosphate dikinase)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	Arabidopsis thaliana	At3g51600	824323	LTP5 (Lipid transfer protein 5)	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	38	Glycine max	GmaAffx.20763.1.S1_s_at	AW100360	-	-	3e+0	At2g33370	60S ribosomal protein L23 (RPL23B)	C.G.	S.X.	Please select
0.04	2e-2	40	Hordeum vulgare	HI04P16u_at	HI04P16u	-	-	7e-1	At3g04370	PDLP4 (PLASMODESMATA-LOCATED PROTEIN 4)	C.G.	S.X.	Please select
0.53	2e-156	553	Oryza sativa	Os02g0133900	AK107180.1	-	Eukaryotic protein of unknown function DUF829family protein	7e-1	At4g24240	WRKY7	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	6e-2	40	Populus trichocarpa	PtpAffx.7514.1.S1_at	CF229798	hypothetical protein	-	4e+0	At5g38950	germin-like protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.30	2e-60	234	Triticum aestivum	TaAffx.12464.1.S1_at	BJ261413	-	-	2e-3	At4g19512	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1621536_at	CF514198	hypothetical protein LOC100249350	-	3e-10	At1g04230	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage