Gene omics information

Query gene ID	Zm.4283.2.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.4283.2.S1_at	AY109824.1	-	-	4e-26	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	S.X.	H.G.	Please select
0.91	99.0	Zm.3303.2.A1_at	CO527646	lipoxygenase	-	3e+0	At3g22400	LOX5	S.X.	H.G.	Please select
0.67	85.8	Zm.7598.1.A1_at	CF629653	-	-	3e-3	At2g40510	40S ribosomal protein S26 (RPS26A)	S.X.	H.G.	Please select
0.57	75.1	Zm.155.2.S1_at	AY109498.1	-	-	4e-3	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	S.X.	H.G.	Please select
0.55	71.6	Zm.5305.1.A1_at	CK370425	ribonucleoprotein A	-	6e-4	At2g37220	29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative	S.X.	H.G.	Please select
0.53	69.1	Zm.1011.1.S1_at	BM073180	hypothetical protein LOC100192700	-	3e+0	At1g35242	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.8	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.9	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.3	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.5	99.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.2	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.0	99.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.8	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.3	99.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.0	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	0	3245	Zm.4283.2.A1_at	AI001292	-	-	4e-26	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	C.G.	S.X.	Please select
0.26	0	690	Zm.5551.1.A1_a_at	AY110434.1	-	-	6e-1	At1g63820	-	C.G.	S.X.	Please select
0.14	8e-161	567	Zm.4283.1.A1_a_at	CF048229	hypothetical protein LOC100193869 /// hypothetical protein LOC100279728	-	3e-22	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	C.G.	S.X.	Please select
0.14	8e-161	567	Zm.4283.1.A1_x_at	CF048229	hypothetical protein LOC100279728	-	3e-22	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	C.G.	S.X.	Please select
0.15	4e-150	531	Zm.4283.4.A1_at	AI691994	hypothetical protein LOC100193869	-	4e-17	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	C.G.	S.X.	Please select
0.01	7e-4	46	Zm.16783.2.A1_at	AI396081	-	-	1e-1	At3g25573	unknown protein	C.G.	S.X.	Please select
0.01	7e-4	46	Zm.12538.1.A1_at	AI586627	-	-	2e-2	At5g16030	unknown protein	C.G.	S.X.	Please select
0.01	3e-3	44	Zm.4542.1.A1_at	AI734680	-	-	1e+0	At3g44783	unknown protein	C.G.	S.X.	Please select
0.01	3e-3	44	Zm.3043.1.S1_at	AW146614	hypothetical protein LOC100278412	-	2e-2	At4g40010	SNRK2.7 (SNF1-RELATED PROTEIN KINASE 2.7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	4e-26	121	Arabidopsis thaliana	At2g40290	818621	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	F:RNA binding, translation initiation factor activity;P:translation;C:nucleus;BOMAFPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-12	75	Glycine max	Gma.16803.1.A1_at	CD404227	-	-	9e-39	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	C.G.	S.X.	Please select
0.12	5e-82	305	Hordeum vulgare	Contig3799_at	Contig3799	-	-	9e-16	At5g05470	EIF2 ALPHA	C.G.	S.X.	Please select
0.28	0	805	Oryza sativa	Os04g0499300	AY224450.1	-	Initiation factor eIF-4 gamma, middle domaincontaining protein	6e-12	At5g57870	eukaryotic translation initiation factor 4F, putative / eIF-4F, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	3e-30	135	Populus trichocarpa	Ptp.50.1.A1_s_at	CV241297	hypothetical protein	-	2e-18	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.28	0	676	Triticum aestivum	Ta.8547.1.S1_at	M95747.1	initiation factor (iso)4f p82 subunit	-	8e-15	At5g57870	eukaryotic translation initiation factor 4F, putative / eIF-4F, putative	C.G.	S.X.	Please select
0.06	2e-3	44	Vitis vinifera	1619361_at	CB982760	hypothetical protein LOC100260481	-	4e-9	At2g24050	MIF4G domain-containing protein / MA3 domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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