Gene omics information

Query gene ID	Zm.4277.2.S1_a_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.4	Zm.4277.2.S1_a_at	BQ704082	-	-	5e-17	At1g54510	ATNEK1 (ARABIDOPSIS THALIANA NIMA-RELATED SERINE/THREONINE KINASE 1)	S.X.	H.G.	Please select
0.40	48.5	Zm.15891.2.A1_at	BM267660	60S ribosomal protein L13-2	-	7e-31	At5g23900	60S ribosomal protein L13 (RPL13D)	S.X.	H.G.	Please select
0.36	41.3	Zm.14.1.S1_at	BI430690	nucleic acid binding protein1	-	1e-8	At5g50250	31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative	S.X.	H.G.	Please select
0.22	16.9	Zm.13899.1.A1_at	AF099383.1	R2R3MYB-domain protein	-	6e-2	At4g37780	MYB87 (MYB DOMAIN PROTEIN 87)	S.X.	H.G.	Please select
0.16	9.4	Zm.13575.2.A1_at	BQ538921	DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide	-	4e-7	At3g59600	NRPB8B	S.X.	H.G.	Please select
0.09	4.0	Zm.6203.2.A1_a_at	CF637772	putative glutathione peroxidase	-	2e-40	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.9	99.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
36.4	99.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.1	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.9	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.3	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.7	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2381	Zm.4277.2.A1_at	BQ704082	-	-	5e-17	At1g54510	ATNEK1 (ARABIDOPSIS THALIANA NIMA-RELATED SERINE/THREONINE KINASE 1)	C.G.	S.X.	Please select
0.23	9e-137	486	Zm.4277.1.S1_at	AI834021	-	-	2e-18	At3g63280	ATNEK4 (NIMA-RELATED KINASE 4)	C.G.	S.X.	Please select
0.05	4e-3	42	Zm.3687.1.A1_at	AW042269	-	-	1e-28	At3g44200	NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.6067.2.A1_at	CA401344	hypothetical protein LOC100277938	-	9e-4	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.6067.1.S1_at	CA398401	-	-	6e-2	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.4716.1.A1_at	AI738149	hypothetical protein LOC100193057	-	1e-1	At4g37750	ANT (AINTEGUMENTA)	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.2559.1.A1_at	BE639404	NEDD8-activating enzyme E1 catalytic subunit	-	7e+0	At3g28193	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.12926.1.A1_at	CF634151	hypothetical protein LOC100278966	-	3e-6	At5g02800	protein kinase family protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.7696.1.A1_at	BM268891	BEL1-related homeotic protein 30	-	9e-3	At4g34610	BLH6 (BELL1-LIKE HOMEODOMAIN 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	5e-17	89	Arabidopsis thaliana	At1g54510	841893	ATNEK1 (ARABIDOPSIS THALIANA NIMA-RELATED SERINE/THREONINE KINASE 1)	Encodes AtNEK1, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	1e-2	42	Glycine max	GmaAffx.89336.1.A1_at	CK605807	-	-	1e-14	At1g54510	ATNEK1 (ARABIDOPSIS THALIANA NIMA-RELATED SERINE/THREONINE KINASE 1)	C.G.	S.X.	Please select
0.04	2e-5	50	Hordeum vulgare	Contig25849_at	Contig25849	-	-	3e-1	At1g51110	plastid-lipid associated protein PAP / fibrillin family protein	C.G.	S.X.	Please select
0.47	0	835	Oryza sativa	Os12g0604700	AK072382.1	-	LSTK-1-like kinase	1e-15	At3g63280	ATNEK4 (NIMA-RELATED KINASE 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	9e-4	46	Populus trichocarpa	PtpAffx.200696.1.S1_at	pmrna1345	hypothetical protein	-	8e-139	At3g44200	NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.51	9e-179	626	Triticum aestivum	TaAffx.98504.1.S1_at	BG607257	-	-	4e-12	At1g54510	ATNEK1 (ARABIDOPSIS THALIANA NIMA-RELATED SERINE/THREONINE KINASE 1)	C.G.	S.X.	Please select
0.03	7e-1	34	Vitis vinifera	1619130_x_at	AY427145.1	-	-	4e+0	At3g28170	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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