CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.4257.1.S1_at

Gene name respiratory burst oxidase protein A

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 89.9 Zm.4257.1.S1_at AW076388 respiratory burst oxidase protein A - 5e-12 At1g64060 ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) S.X. H.G.
0.67 85.8 ZmAffx.936.1.S1_at AI677620 - - 3e+0 At3g10490 anac052 (Arabidopsis NAC domain containing protein 52) S.X. H.G.
0.67 85.8 Zm.17521.1.S1_at CK370540 complex 1 protein containing protein - 2e+0 At4g39340 unknown protein S.X. H.G.
0.60 77.8 Zm.6268.1.A1_at BM073308 hypothetical protein LOC100192813 - 2e-3 At2g16740 UBC29 (ubiquitin-conjugating enzyme 29) S.X. H.G.
0.56 74.4 ZmAffx.996.1.A1_at AI857152 - - 3e+0 At5g02230 haloacid dehalogenase-like hydrolase family protein S.X. H.G.
0.56 74.4 Zm.5313.2.A1_at CA398418 60S ribosomal protein L12 - 9e-9 At2g37190 60S ribosomal protein L12 (RPL12A) S.X. H.G.
0.56 74.4 Zm.10112.1.A1_at BM268000 - - 1e+0 At5g23810 AAP7 S.X. H.G.
0.52 67.3 ZmAffx.398.1.A1_at AI676826 - - 3e+0 At4g15150 glycine-rich protein S.X. H.G.
0.50 65.7 Zm.13679.1.A1_at AW424469 chemocyanin - 9e-5 At1g72230 plastocyanin-like domain-containing protein S.X. H.G.
0.48 61.3 Zm.14476.2.A1_at AY109949.1 Protein disulfide isomerase - 1e-5 At3g54960 ATPDIL1-3 (PDI-LIKE 1-3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
35.3 99.9 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.0 99.8 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.8 99.7 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.3 99.6 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.3 99.6 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.8 99.6 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.2 99.6 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.3 99.3 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7 98.9 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8 95.5 GSM320456 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-11 69 Zm.12390.1.A1_at BF727971 - - 6e-3 At1g09090 ATRBOHB (respiratory burst oxidase homolog B) C.G. S.X.
0.06 9e-9 61 Zm.15798.1.S1_at CK370673 - - 5e-8 At1g19230 respiratory burst oxidase protein E (RbohE) / NADPH oxidase C.G. S.X.
0.07 1e-7 57 Zm.4309.1.S1_at AW052961 respiratory burst oxidase protein B - 1e-25 At1g64060 ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) C.G. S.X.
0.05 5e-4 46 Zm.13659.1.A1_at AY107147.1 - - 1e-2 At5g47910 RBOHD (RESPIRATORY BURST OXIDASE HOMOLOGUE D) C.G. S.X.
0.01 5e-1 36 Zm.9706.1.A1_at BM336274 - - 4e+0 At1g70000 DNA-binding family protein C.G. S.X.
0.01 2e+0 34 Zm.7306.1.S1_at AB044567.1 Ca2+/H+ antiporter - 7e-11 At3g13320 CAX2 (CATION EXCHANGER 2) C.G. S.X.
0.01 2e+0 34 Zm.73.1.A1_at BM267895 alpha tubulin6 - 0 At5g19780 TUA5 C.G. S.X.
0.01 2e+0 34 Zm.7501.1.S1_at BM078707 hypothetical protein LOC100192824 - 7e+0 At5g09570 - C.G. S.X.
0.03 2e+0 34 Zm.6657.1.A1_at BM382361 Respiratory burst oxidase-like protein D - 3e-15 At5g07390 ATRBOHA (respiratory burst oxidase homolog A) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 5e-12 73 Arabidopsis thaliana At1g64060 842710 ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) Interacts with AtrbohD gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. - - - C.G. S.X.
0.08 4e-4 48 Glycine max GmaAffx.71361.1.S1_at BI701521 - - 1e-9 At5g07390 ATRBOHA (respiratory burst oxidase homolog A) C.G. S.X.
0.52 1e-171 603 Hordeum vulgare Contig7197_at Contig7197 - - 5e-15 At3g45810 ferric reductase-like transmembrane component family protein C.G. S.X.
0.54 0 668 Oryza sativa Os01g0835500 AK066013.1 - Respiratory burst oxidase homolog 7e-12 At5g60010 FAD binding / calcium ion binding / electron carrier/ iron ion binding / oxidoreductase/ oxidoreductase, acting on NADH or NADPH, with oxygen as acceptor / peroxidase/ superoxide-generating NADPH oxidase C.G. S.X.
0.09 2e-9 65 Populus trichocarpa PtpAffx.203269.1.S1_at pmrna6479 - - 2e-73 At1g64060 ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F) C.G. S.X.
0.21 3e-47 190 Triticum aestivum TaAffx.12570.1.S1_at BJ253637 - - 8e-3 At4g11230 respiratory burst oxidase, putative / NADPH oxidase, putative C.G. S.X.
0.01 6e+0 32 Vitis vinifera 1620817_at CB341464 hypothetical protein LOC100251782 - 1e+0 At5g25360 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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