Gene omics information

Query gene ID	Zm.4255.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.8	Zm.4255.1.A1_at	AY112172.1	-	-	2e+0	At5g23750	remorin family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.19240.1.A1_at	CF624777	DNA binding protein	-	1e+0	At5g54490	PBP1 (PINOID-BINDING PROTEIN 1)	S.X.	H.G.	Please select
0.60	77.8	Zm.537.2.S1_at	CF054696	hypothetical protein LOC100273405	-	1e-46	At4g02930	elongation factor Tu, putative / EF-Tu, putative	S.X.	H.G.	Please select
0.43	52.8	Zm.12936.1.A1_at	AY108987.1	-	-	7e-1	At3g21338	unknown protein	S.X.	H.G.	Please select
0.42	51.3	Zm.17312.1.A1_at	CK369501	-	-	5e+0	At5g39700	MYB89 (myb domain protein 89)	S.X.	H.G.	Please select
0.29	28.1	Zm.12977.2.S1_at	AI677017	Hypothetical protein LOC100193319	-	5e-5	At1g15370	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.4	99.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.4	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.2	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.81	0	1174	Zm.4255.1.S1_at	AY112172.1	-	-	2e+0	At5g23750	remorin family protein	C.G.	S.X.	Please select
0.03	1e-2	40	Zm.5292.1.A1_a_at	BM074771	-	-	2e-7	At5g23750	remorin family protein	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.3884.1.A1_at	BQ486479	alpha-expansin 9	-	1e-1	At1g04778	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.7113.1.A1_at	AY107196.1	-	-	6e-1	At5g19090	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.395.1.S1_at	U58209.1	Binding protein homolog2	-	1e-154	At5g42020	BIP2	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.280.1.A1_at	U58208.1	Binding protein homolog1	-	0	At5g42020	BIP2	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.10383.4.S1_a_at	AY106957.1	transcription factor subunit NF-YB2 /// hypothetical protein LOC100273424 /// CAAT-box DNA binding protein subunit B (NF-YB)	-	3e-12	At3g53340	NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.10383.4.S1_at	AY106957.1	hypothetical protein LOC100273424	-	3e-12	At3g53340	NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10)	C.G.	S.X.	Please select
0.02	6e-1	34	Zm.7704.1.A1_at	BM079575	hypothetical protein LOC100278612	-	5e-3	At1g62240	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	34	Arabidopsis thaliana	At5g23750	832440	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;OMBFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	5e-1	36	Glycine max	PsAffx.C7000108_at	PsAffx.C7000108	-	-	8e+0	At5g24070	peroxidase family protein	C.G.	S.X.	Please select
0.21	1e-33	143	Hordeum vulgare	Contig14482_at	Contig14482	-	-	1e-4	At3g48940	remorin family protein	C.G.	S.X.	Please select
0.18	3e-34	147	Oryza sativa	Os03g0111200	AK060379.1	-	Remorin	5e-1	At1g60989	SCRL7 (SCR-Like 7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	5e-1	36	Populus trichocarpa	PtpAffx.134656.1.A1_at	CV227464	hypothetical protein	-	8e-20	At4g15800	RALFL33 (ralf-like 33)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	2e-33	143	Triticum aestivum	Ta.10328.1.S1_at	CK196410	-	-	4e-5	At3g48940	remorin family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1621276_at	CB343088	-	-	5e-1	At4g23110	insulin-like growth factor binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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