Gene omics information

Query gene ID	Zm.42.1.S1_at
Gene name	CDPK-related protein kinase
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.82	94.6	Zm.42.1.S1_at	D84508.1	CDPK-related protein kinase	-	9e-17	At2g46700	calcium-dependent protein kinase, putative / CDPK, putative	S.X.	H.G.	Please select
0.33	36.0	Zm.5137.1.A1_a_at	AI932037	60S ribosomal protein L31	-	6e-6	At2g19740	60S ribosomal protein L31 (RPL31A)	S.X.	H.G.	Please select
0.31	31.6	Zm.9000.1.A1_at	BM378319	alpha-glucan phosphorylase, H isozyme	-	2e-22	At3g46970	PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2)	S.X.	H.G.	Please select
0.31	31.6	Zm.15394.1.S1_at	BM268179	hypothetical protein LOC100194032 /// adhesive/proline-rich protein /// adhesive/proline-rich protein	-	5e+0	At4g08730	unknown protein	S.X.	H.G.	Please select
0.29	28.1	Zm.2189.1.A1_at	BM074210	hypothetical protein LOC100276717	-	3e-14	At1g21065	unknown protein	S.X.	H.G.	Please select
0.27	24.6	Zm.35.1.S1_x_at	AY434688.1	-	-	5e-1	At4g33690	unknown protein	S.X.	H.G.	Please select
0.17	10.6	Zm.13810.1.S1_at	AB042267.1	hypothetical protein LOC100191253	-	6e-8	At3g56380	ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)	S.X.	H.G.	Please select
0.15	8.6	Zm.3722.1.A1_at	BG874143	PGR5	-	2e+1	At5g24655	LSU4 (RESPONSE TO LOW SULFUR 4)	S.X.	H.G.	Please select
0.11	5.3	Zm.1639.3.S1_at	BG842159	-	-	5e+0	At4g22920	NYE1 (NON-YELLOWING 1)	S.X.	H.G.	Please select
0.10	4.6	Zm.3738.1.S1_at	BM334767	hypothetical protein LOC100191896	-	6e-1	At2g13770	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
27.6	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.6	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.9	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.5	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.8	99.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.5	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.5	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.73	0	2083	Zm.41.1.S1_at	AI600908	calcium dependent protein kinase1	-	1e-16	At2g46700	calcium-dependent protein kinase, putative / CDPK, putative	C.G.	S.X.	Please select
0.09	8e-6	52	Zm.14134.1.A1_at	CK985750	CDPK-related protein kinase	-	1e-18	At3g50530	CRK (CDPK-related kinase)	C.G.	S.X.	Please select
0.04	3e-5	50	Zm.19037.1.S1_at	CA404446	-	-	1e-30	At3g50530	CRK (CDPK-related kinase)	C.G.	S.X.	Please select
0.01	8e-3	42	Zm.17325.1.A1_at	CF627917	-	-	2e-51	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	C.G.	S.X.	Please select
0.01	3e-2	40	Zm.17499.1.A1_at	CK145371	hypothetical protein LOC100279269	-	3e-1	At2g03230	-	C.G.	S.X.	Please select
0.04	1e-1	38	ZmAffx.459.1.S1_at	AI677212	-	-	8e-1	At1g26910	60S ribosomal protein L10 (RPL10B)	C.G.	S.X.	Please select
0.04	1e-1	38	ZmAffx.459.1.A1_at	AI677212	-	-	8e-1	At1g26910	60S ribosomal protein L10 (RPL10B)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.837.1.A1_at	BG320171	hypothetical protein LOC100272396	-	1e-40	At4g21660	proline-rich spliceosome-associated (PSP) family protein	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.3895.1.A1_at	BM079254	hypothetical protein LOC100272890	-	1e-30	At3g50820	PSBO2 (PHOTOSYSTEM II SUBUNIT O-2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	9e-17	89	Arabidopsis thaliana	At2g46700	819282	calcium-dependent protein kinase, putative / CDPK, putative	F:in 6 functions;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:unknown;MOPFBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	1e-7	59	Glycine max	Gma.17975.2.S1_at	BQ628976	-	-	2e-29	At3g50530	CRK (CDPK-related kinase)	C.G.	S.X.	Please select
0.34	8e-68	258	Hordeum vulgare	Contig16466_at	Contig16466	-	-	4e-15	At2g46700	calcium-dependent protein kinase, putative / CDPK, putative	C.G.	S.X.	Please select
0.66	0	868	Oryza sativa	Os06g0714200	BM419528	-	Calcium/calmodulin-dependent protein kinasehomolog|CaM kinase homolog|MCK1 protein	8e-19	At2g46700	calcium-dependent protein kinase, putative / CDPK, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.30	5e-56	220	Populus trichocarpa	PtpAffx.210312.1.S1_at	pmrna20295	CPK related kinase 4	-	1e-18	At5g24430	calcium-dependent protein kinase, putative / CDPK, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	3e-152	539	Triticum aestivum	Ta.17648.1.S1_at	CA623067	-	-	4e-20	At2g46700	calcium-dependent protein kinase, putative / CDPK, putative	C.G.	S.X.	Please select
0.30	2e-45	182	Vitis vinifera	1610570_at	CA807939	hypothetical protein LOC100246879	-	2e-24	At5g24430	calcium-dependent protein kinase, putative / CDPK, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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