Gene omics information

Query gene ID	Zm.4190.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.4190.1.A1_at	BE344878	-	-	9e-31	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	S.X.	H.G.	Please select
0.80	94.0	Zm.2376.4.A1_x_at	CK368489	cortical cell-delineating protein	-	6e+0	At3g24510	-	S.X.	H.G.	Please select
0.71	88.2	Zm.5290.1.S1_at	AY104548.1	F-box domain containing protein	-	4e+0	At3g07260	forkhead-associated domain-containing protein / FHA domain-containing protein	S.X.	H.G.	Please select
0.63	81.1	Zm.3144.1.S1_at	CD441537	nucleic acid binding protein	-	3e+0	At4g20420	tapetum-specific protein-related	S.X.	H.G.	Please select
0.60	77.8	Zm.3772.1.S1_at	CF010220	Zea m 1 allergen	-	6e-4	At2g40470	LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15)	S.X.	H.G.	Please select
0.55	71.6	Zm.2601.1.S1_at	U45856.1	cytosolic glyceroldehyde-3-phosphate dehydrogenase GAPC3 /// glyceraldehyde-3-phosphate dehydrogenase	-	3e-139	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.0	97.7	GSM253275	ZM_8d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
6.0	97.3	GSM253276	ZM_8d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
6.0	97.3	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
5.4	97.0	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM253274	ZM_8d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
5.0	96.7	GSM253264	ZM_4d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
4.8	96.6	GSM253265	ZM_4d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
4.5	96.3	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM253263	ZM_4d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.3	96.1	GSM253258	ZM_2d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e-1	36	Zm.18743.1.A1_at	CK985678	palmitoyltransferase ZDHHC9	-	6e-17	At5g50020	zinc finger (DHHC type) family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.15881.1.A1_x_at	BM379962	-	-	8e-1	At5g56710	60S ribosomal protein L31 (RPL31C)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.14545.1.A1_at	CD448362	zinc ion binding protein	-	5e-17	At4g36860	zinc ion binding	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.2079.1.S1_at	AW261425	-	-	5e-1	At1g21790	-	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.2079.1.A1_at	AY111392.1	-	-	5e-1	At1g21790	-	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.17836.1.A1_at	CK370651	60S ribosomal protein L31	-	4e-22	At5g56710	60S ribosomal protein L31 (RPL31C)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.17836.1.A1_x_at	CK370651	60S ribosomal protein L31	-	4e-22	At5g56710	60S ribosomal protein L31 (RPL31C)	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.13938.2.S1_at	CK368471	-	-	4e-23	At2g19740	60S ribosomal protein L31 (RPL31A)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.12678.3.S1_at	AW090920	hypothetical protein LOC100272257	-	3e-9	At4g32330	-	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	9e-31	135	Arabidopsis thaliana	At4g34350	829585	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	Arabidopsis ISPH is involved in the plastid nonmevalonate pathway of isoprenoid biosynthesis. It was shown to complement the lethal phenotype of E. coli ispH mutant and is therefore most likely encodes a protein with 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity involved in the last step of mevalonate-independent isopentenyl biosynthesis. Mutant has Albino seedling.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.30	2e-17	91	Glycine max	Gma.10455.1.S1_s_at	BQ628953	-	-	3e-8	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	C.G.	S.X.	Please select
0.48	0	773	Hordeum vulgare	Contig3848_at	Contig3848	-	-	7e-23	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	C.G.	S.X.	Please select
0.46	0	847	Oryza sativa	Os03g0731900	AK064873.1	-	Isopentenyl/dimethylallyl diphosphate synthase(Fragment)	8e-23	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.40	8e-35	149	Populus trichocarpa	PtpAffx.20254.1.S1_at	CV271880	hypothetical protein	-	3e-49	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	3e+0	34	Triticum aestivum	TaAffx.95676.1.S1_at	BE445977	-	-	6e-1	At4g18450	ethylene-responsive factor, putative	C.G.	S.X.	Please select
0.35	2e-47	188	Vitis vinifera	1619267_at	CB977052	hypothetical protein LOC100267479	-	1e-46	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage