Gene omics information

Query gene ID Zm.419.1.S1_at
Gene name histone deacetylase
Organism Zea mays


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8996.8Zm.419.1.S1_atAF045473.1histone deacetylase-8e-26At5g63110HDA6 (HISTONE DEACETYLASE 6)S.X.H.G.
0.5674.4Zm.710.1.A1_atAY103930.1--6e+0At2g18210unknown proteinS.X.H.G.
0.4455.7Zm.6195.1.A1_atAI668513hypothetical protein LOC100275106-4e+0At4g17790-S.X.H.G.
0.3029.8Zm.7166.1.A1_atAF200532.1cellulose synthase8-3e-36At4g39350CESA2 (CELLULOSE SYNTHASE A2)S.X.H.G.
0.3029.8Zm.14057.2.S1_atAF457961.1--8e-20At4g22910FZR2 (FIZZY-RELATED 2)S.X.H.G.
0.2318.6Zm.10670.1.A1_atCO529849hypothetical protein LOC100280379-1e+0At5g11410protein kinase family proteinS.X.H.G.
0.2115.5Zm.5048.5.S1_a_atCF634037protein disulfide isomerase-7e-29At2g47470UNE5 (UNFERTILIZED EMBRYO SAC 5)S.X.H.G.
0.1912.8Zm.4238.1.A1_atBM073006cleavage and polyadenylation specificity factor, 100 kDa subunit-8e-1At2g14282SCRL18 (SCR-Like 18)S.X.H.G.
0.136.8Zm.2119.1.A1_atAI665420--8e-5At3g23890TOPII (TOPOISOMERASE II)S.X.H.G.
0.094.0Zm.6569.5.A1_atCF637455--2e-1At3g01570glycine-rich protein / oleosinS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
8.498.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.098.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.497.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.197.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.197.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.897.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.697.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.296.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.195.9GSM202303Mo17 immature ear tissue, biological replicate 3GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.995.7GSM202302B73xMo17 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.237e-40165Zm.13633.1.A1_atAY107370.1hypothetical protein LOC100276617-1e-34At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.192e-24113Zm.398.1.S1_atAF384032.1histone deacetylase HDA101 /// RPD3 histone deacetylase homolog-1e-30At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.012e-344Zm.1653.2.A1_a_atAY104306.1histone deacetylase-8e-44At3g44680HDA9 (HISTONE DEACETYLASE 9)C.G.S.X.
0.014e-136Zm.1702.1.A1_atAI964698hypothetical protein LOC100193172-2e-10At5g53580aldo/keto reductase family proteinC.G.S.X.
0.012e+034Zm.9555.1.A1_atBM347835--1e-2At3g47350short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.012e+034Zm.9555.1.A1_a_atBM347835--1e-2At3g47350short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.012e+034Zm.9555.1.A1_x_atBM347835--1e-2At3g47350short-chain dehydrogenase/reductase (SDR) family proteinC.G.S.X.
0.012e+034Zm.6201.1.A1_atBE643575--1e-1At3g50690leucine-rich repeat family proteinC.G.S.X.
0.012e+034Zm.5048.3.S1_x_atAY103537.1hypothetical protein LOC100279926-3e-57At4g24190SHD (SHEPHERD)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.278e-26119Arabidopsis thalianaAt5g63110836431HDA6 (HISTONE DEACETYLASE 6)RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.---C.G.S.X.
0.382e-67258Glycine maxGmaAffx.58612.1.S1_atBM954406--6e-19At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.213e-39163Hordeum vulgareContig5301_atContig5301--1e-43At4g38130HD1 (HISTONE DEACETYLASE 1)C.G.S.X.
0.6301526Oryza sativaOs08g0344100AK111861.1-Histone deacetylase2e-14At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.145e-31137Populus trichocarpaPtpAffx.32882.1.A1_atCK096564histone deacetylase-3e-29At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.530791Triticum aestivumTaAffx.77390.1.S1_atCD893386histone deacetylase-1e-19At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
0.177e-39161Vitis vinifera1620045_atCF413997similar to HDA6 (HISTONE DEACETYLASE 6); histone deacetylase-4e-38At5g63110HDA6 (HISTONE DEACETYLASE 6)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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