Gene omics information

Query gene ID	Zm.4183.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.4183.1.A1_at	AI857198	-	-	4e-1	At4g03113	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.2269.1.S1_at	CF631922	-	-	1e-7	At5g51820	PGM (PHOSPHOGLUCOMUTASE)	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.788.1.A1_at	AI759113	-	-	8e-1	At4g33925	unknown protein	S.X.	H.G.	Please select
0.35	38.9	Zm.17694.1.S1_at	CK370322	-	-	5e+0	At3g22230	60S ribosomal protein L27 (RPL27B)	S.X.	H.G.	Please select
0.29	28.1	Zm.3419.1.S1_at	CF272935	thioredoxin h2 protein	-	1e-1	At2g35010	ATO1 (Arabidopsis thioredoxin O1)	S.X.	H.G.	Please select
0.20	14.2	Zm.7060.1.A1_at	CO530085	-	-	4e-1	At3g10500	anac053 (Arabidopsis NAC domain containing protein 53)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.2	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM206318	Lower pulvinus 2 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.6	97.1	GSM206317	Right pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
5.1	96.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM206311	Left pulvinus control total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.7	96.5	GSM206313	Upper pulvinus 5 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-5	50	Zm.4160.1.A1_at	CF243936	indole-3-acetate beta-glucosyltransferase	-	1e-2	At4g15550	IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE)	C.G.	S.X.	Please select
0.03	5e-5	48	Zm.8707.1.A1_at	BM333131	hypothetical protein LOC100272998	-	5e-5	At4g29590	methyltransferase	C.G.	S.X.	Please select
0.04	8e-4	44	Zm.3311.1.A1_at	AY105628.1	-	-	6e+0	At5g53670	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	Zm.1682.2.S1_at	AI834570	ran-binding protein 1	-	3e-12	At1g07140	SIRANBP	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.6743.1.S1_at	AF494284.1	empty pericarp 2	-	7e+0	At4g15802	-	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.17175.1.A1_at	CO526696	hypothetical protein LOC100273291	-	5e-11	At1g65560	allyl alcohol dehydrogenase, putative	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.919.1.S1_at	BE509982	-	-	3e+0	At3g58850	PAR2 (PHY RAPIDLY REGULATED 2)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.8916.1.A1_at	BM073361	-	-	3e-1	At3g23860	GTP-binding protein-related	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.877.1.A1_at	BM078654	hypothetical protein LOC100276059	-	8e+0	At1g01750	ADF11 (ACTIN DEPOLYMERIZING FACTOR 11)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-1	36	Arabidopsis thaliana	At4g03113	6241356	unknown protein	F:unknown;P:unknown;C:mitochondrion	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	34	Glycine max	HgAffx.23897.1.S1_at	BF013964	-	-	5e-2	At3g16870	zinc finger (GATA type) family protein	C.G.	S.X.	Please select
0.03	6e-2	38	Hordeum vulgare	Contig9436_at	Contig9436	-	-	3e-2	At5g53720	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.13	4e-3	44	Oryza sativa	Os01g0974600	CA757906	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	1e+0	At1g76460	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	6e-1	36	Populus trichocarpa	PtpAffx.8179.2.S1_at	CF236576	-	-	1e-1	At2g36320	zinc finger (AN1-like) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e+0	34	Triticum aestivum	TaAffx.51361.1.S1_at	CA726818	-	-	3e-1	At3g13480	unknown protein	C.G.	S.X.	Please select
0.02	5e-1	34	Vitis vinifera	1616896_at	CB977752	hypothetical protein LOC100248718	-	1e+0	At1g49715	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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