CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.4164.1.A1_x_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 79.5 Zm.4164.1.A1_x_at BM079246 - - 5e+0 At3g01860 unknown protein S.X. H.G.
0.80 94.0 Zm.18946.1.A1_at BM338625 hypothetical protein LOC100278262 - 1e+0 At1g69660 meprin and TRAF homology domain-containing protein / MATH domain-containing protein S.X. H.G.
0.60 77.8 Zm.18992.1.A1_at CO521210 - - 4e-1 At5g20370 serine-rich protein-related S.X. H.G.
0.55 71.6 Zm.17192.1.A1_at BM339467 - - 5e+0 At2g22520 unknown protein S.X. H.G.
0.50 65.7 Zm.13427.1.S1_at AF124738.1 hypothetical protein LOC100194389 - 1e-7 At4g21520 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.50 65.7 Zm.9975.1.A1_at BM074697 - - 7e-6 At5g64200 ATSC35 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
68.2 100.0 GSM253277 ZM_8d_SG200_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
14.4 98.9 GSM253273 ZM_4.5d_SG200_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
14.2 98.8 GSM253272 ZM_4.5d_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
10.7 98.5 GSM253249 ZM_12h_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
10.4 98.4 GSM258191 B73 11-day seedling aerial tissue biological replicate 3 GSE10236 Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
9.2 98.2 GSM253246 ZM_12h_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
9.2 98.2 GSM206310 Lower pulvinus 60 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
9.0 98.2 GSM206298 Lower pulvinus 60 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
8.9 98.2 GSM253254 ZM_24h_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
8.2 98.0 GSM206292 Upper pulvinus 60 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.68 3e-120 430 Zm.4164.4.A1_a_at BM267227 - - 3e+1 At5g53180 PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) C.G. S.X.
0.68 3e-120 430 Zm.4164.4.A1_x_at BM267227 - - 3e+1 At5g53180 PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) C.G. S.X.
0.68 3e-120 430 Zm.4164.4.A1_at BM267227 - - 3e+1 At5g53180 PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) C.G. S.X.
0.63 2e-108 391 Zm.4164.3.A1_s_at CF636517 hypothetical protein LOC100278068 - 6e+0 At5g36722 unknown protein C.G. S.X.
0.63 2e-108 391 Zm.4164.3.A1_at CF636517 - - 6e+0 At5g36722 unknown protein C.G. S.X.
0.63 2e-108 391 Zm.4164.3.A1_a_at CF636517 - - 6e+0 At5g36722 unknown protein C.G. S.X.
0.63 2e-108 391 Zm.4164.3.A1_x_at CF636517 - - 6e+0 At5g36722 unknown protein C.G. S.X.
0.74 7e-59 226 Zm.12387.1.S1_at AW000286 - - 2e+1 Atmg01300 - C.G. S.X.
0.03 6e-4 44 Zm.9384.1.A1_at BM349149 - - 6e+0 At4g28170 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e+0 32 Arabidopsis thaliana At3g01860 820070 unknown protein F:molecular_function unknown;P:response to cadmium ion;C:chloroplast;PM - - - C.G. S.X.
0.03 8e-3 42 Glycine max Gma.16599.1.S1_s_at CD404419 - - 1e-4 At4g26150 CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1) C.G. S.X.
0.09 3e-12 71 Hordeum vulgare Contig8620_at Contig8620 - - 3e-1 At4g33565 protein binding / zinc ion binding C.G. S.X.
0.04 4e-5 50 Oryza sativa Os08g0113900 AK062376.1 - Conserved hypothetical protein 5e+0 At4g24350 phosphorylase family protein C.G. S.X.
0.04 8e-3 42 Populus trichocarpa PtpAffx.153114.1.A1_at CV269422 - - 4e+0 At5g05430 - C.G. S.X.
0.10 2e-9 63 Triticum aestivum Ta.24745.1.S1_at BJ298605 - - 4e+0 At4g02430 pre-mRNA splicing factor, putative / SR1 protein, putative C.G. S.X.
0.03 6e-3 40 Vitis vinifera 1618440_s_at CD801284 hypothetical protein LOC100256565 - 2e-2 At5g15600 SP1L4 (SPIRAL1-LIKE4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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