Gene omics information

Query gene ID	Zm.4161.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.44	55.7	Zm.4161.1.A1_at	AY104817.1	-	-	6e-5	At3g23640	HGL1 (heteroglycan glucosidase 1)	S.X.	H.G.	Please select
0.71	88.2	Zm.4927.1.A1_at	AI691487	-	-	6e+0	At5g05930	guanylyl cyclase-related (GC1)	S.X.	H.G.	Please select
0.67	85.8	Zm.13613.1.A1_at	CF623212	hypothetical protein LOC100275557	-	3e-6	At4g21490	NDB3	S.X.	H.G.	Please select
0.67	85.8	Zm.10092.1.A1_at	AY105279.1	hypothetical protein LOC100217059	-	7e-3	At3g43520	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.14435.1.S1_at	AY109360.1	60S ribosomal protein L22-2	-	3e-35	At3g05560	60S ribosomal protein L22-2 (RPL22B)	S.X.	H.G.	Please select
0.50	65.7	Zm.4720.1.S1_at	AY108931.1	-	-	7e-2	At5g13910	LEP (LEAFY PETIOLE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.1	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	6e-31	135	Zm.10831.1.S1_at	BQ619456	-	-	6e-1	At5g04347	-	C.G.	S.X.	Please select
0.03	3e-8	59	Zm.5484.1.A1_at	AI622197	hypothetical protein LOC100279851	-	1e+1	At5g35080	protein binding	C.G.	S.X.	Please select
0.01	4e-1	36	ZmAffx.1542.1.S1_at	40794996-19	-	-	1e+0	At1g80690	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.8933.1.A1_at	BM080140	NADH-ubiquinone oxidoreductase 39 kDa subunit	-	5e-12	At2g20360	binding / catalytic/ coenzyme binding	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.1616.1.A1_at	BM380022	plasma membrane-bound peroxidase 3-1	-	6e-2	At1g14540	anionic peroxidase, putative	C.G.	S.X.	Please select
0.01	6e+0	32	ZmAffx.800.1.A1_at	AI770361	-	-	2e-4	At3g58580	hydrolase	C.G.	S.X.	Please select
0.01	6e+0	32	ZmAffx.800.1.S1_at	AI770361	hypothetical protein LOC100279626	-	2e-4	At3g58580	hydrolase	C.G.	S.X.	Please select
0.01	6e+0	32	ZmAffx.1434.1.S1_at	11990232-19	-	-	0	Atcg00120	-	C.G.	S.X.	Please select
0.01	6e+0	32	Zm.8886.1.A1_at	BM074197	-	-	7e-1	At3g54490	RPB5E (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, E)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-5	50	Arabidopsis thaliana	At3g23640	821944	HGL1 (heteroglycan glucosidase 1)	F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:chloroplast;BMFOPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-1	38	Glycine max	GmaAffx.46095.3.S1_at	CA935945	-	-	8e-17	At3g19770	VPS9A	C.G.	S.X.	Please select
0.21	1e-44	180	Hordeum vulgare	Contig15078_at	Contig15078	-	-	5e+0	At5g59105	-	C.G.	S.X.	Please select
Os07g0420700	0.37	0e+0	Oryza sativa	Os02g0274100	AF442962.1	-	3-2-trans-enoyl-CoA isomerase (EC 5.3.3.8)	2e-9	At4g29010	AIM1 (ABNORMAL INFLORESCENCE MERISTEM)	C.G.	S.X.	Please select
0.05	8e-2	40	Populus trichocarpa	PtpAffx.220115.1.S1_at	pmrna36450	hypothetical protein	-	7e-89	At3g23640	HGL1 (heteroglycan glucosidase 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.32	4e-114	412	Triticum aestivum	Ta.2245.1.A1_at	BJ321534	-	-	2e+0	At5g07410	pectinesterase family protein	C.G.	S.X.	Please select
0.03	1e-3	44	Vitis vinifera	1618863_at	CF208339	hypothetical protein LOC100254505	-	3e-9	At3g23640	HGL1 (heteroglycan glucosidase 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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