Gene omics information

Query gene ID	Zm.4119.1.S1_at
Gene name	ATP binding protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	71.6	Zm.4119.1.S1_at	AI854985	ATP binding protein	-	2e-4	At3g09010	protein kinase family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.6416.1.S1_at	BQ744568	hypothetical protein LOC100277106	-	3e+0	At5g22880	HTB2	S.X.	H.G.	Please select
0.40	48.5	Zm.7021.1.S1_at	CD440551	mitochondrial import inner membrane translocase subunit Tim8	-	3e-4	At5g50810	TIM8	S.X.	H.G.	Please select
0.33	36.0	Zm.6093.2.S1_at	CD440434	translocon-associated protein beta containing protein	-	6e-1	At5g14030	translocon-associated protein beta (TRAPB) family protein	S.X.	H.G.	Please select
0.32	33.4	Zm.3168.1.A1_x_at	AW331178	-	-	5e-2	At3g51960	bZIP family transcription factor	S.X.	H.G.	Please select
0.31	31.6	Zm.19234.1.A1_at	AI622555	hypothetical protein LOC100191668	-	3e-1	At1g63120	ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.0	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.1	94.3	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-4	46	Zm.4035.1.A1_at	AI834003	hypothetical protein LOC100279841	-	9e-4	At3g11110	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.5731.1.A1_at	BM378722	-	-	7e-1	At3g54560	HTA11	C.G.	S.X.	Please select
0.02	1e-1	38	Zm.5777.1.A1_at	AI649584	hypothetical protein LOC100273681	-	7e+0	At4g30660	hydrophobic protein, putative / low temperature and salt responsive protein, putative	C.G.	S.X.	Please select
0.02	1e-1	38	Zm.2220.4.A1_a_at	AY110053.1	Hypothetical protein LOC100216733	-	1e-1	At5g16500	protein kinase family protein	C.G.	S.X.	Please select
0.02	1e-1	38	Zm.2220.4.S1_at	AY110053.1	hypothetical protein LOC100216733	-	1e-1	At5g16500	protein kinase family protein	C.G.	S.X.	Please select
0.02	1e-1	38	Zm.2220.3.S1_at	CA826703	hypothetical protein LOC100273713	-	9e-4	At3g55450	protein kinase, putative	C.G.	S.X.	Please select
0.02	2e+0	34	ZmAffx.977.1.S1_at	AI833949	-	-	8e-1	At4g04630	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	ZmAffx.977.1.A1_at	AI833949	-	-	8e-1	At4g04630	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	Zm.4852.2.A1_at	AI770453	Hypothetical protein LOC100192969	-	3e+0	At3g16300	integral membrane family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	2e-4	48	Arabidopsis thaliana	At3g09010	820053	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	5e-3	44	Glycine max	GmaAffx.257.1.S1_s_at	AW348658	-	-	2e+0	At3g01090	AKIN10 (Arabidopsis SNF1 kinase homolog 10)	C.G.	S.X.	Please select
0.06	7e-3	42	Hordeum vulgare	Contig17776_at	Contig17776	-	-	3e-3	At5g18500	protein kinase family protein	C.G.	S.X.	Please select
0.40	1e-53	212	Oryza sativa	Os04g0679200	AK071300.1	-	Receptor-like serine/threonine kinase	2e-7	At1g11340	S-locus lectin protein kinase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e-4	48	Populus trichocarpa	PtpAffx.73823.1.S1_s_at	DN494858	hypothetical protein	-	6e-3	At4g00960	protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.37	7e-91	335	Triticum aestivum	Ta.6407.2.S1_at	BJ304008	-	-	3e-5	At3g09010	protein kinase family protein	C.G.	S.X.	Please select
0.04	7e-2	38	Vitis vinifera	1617287_at	AY427196.1	-	-	2e-17	At5g10530	lectin protein kinase, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage