Gene omics information

Query gene ID	Zm.4099.2.A1_s_at
Gene name	hypothetical protein LOC100191159
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.4099.2.A1_s_at	AI770849	hypothetical protein LOC100191159	-	8e-1	At2g38870	protease inhibitor, putative	S.X.	H.G.	Please select
0.83	95.6	Zm.18903.1.A1_at	CO530915	-	-	7e-2	At5g07400	forkhead-associated domain-containing protein / FHA domain-containing protein	S.X.	H.G.	Please select
0.80	94.0	Zm.12132.3.S1_a_at	AI461523	hypothetical protein LOC100192680	-	4e-50	At5g03240	UBQ3 (POLYUBIQUITIN 3)	S.X.	H.G.	Please select
0.61	79.5	Zm.6418.1.S1_at	AY108322.1	hypothetical protein LOC100216693	-	2e-1	At3g44580	unknown protein	S.X.	H.G.	Please select
0.59	76.1	Zm.18590.1.A1_at	AW562614	exostosin-like	-	1e+0	At5g22930	unknown protein	S.X.	H.G.	Please select
0.55	71.6	ZmAffx.1097.1.S1_at	AW120085	-	-	1e+1	At5g25770	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.2	99.3	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320473	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	Zm.4099.2.S1_at	AI770849	Hypothetical protein LOC100191159	-	8e-1	At2g38870	protease inhibitor, putative	C.G.	S.X.	Please select
0.23	1e-124	444	Zm.4099.1.A1_at	CD438327	hypothetical protein LOC100191159	-	3e+0	At3g57720	protein kinase, putative	C.G.	S.X.	Please select
0.19	1e-111	400	Zm.5153.1.A1_at	CA400846	-	-	4e+0	At5g41960	unknown protein	C.G.	S.X.	Please select
0.13	8e-70	262	Zm.6956.1.A1_at	AI714976	hypothetical protein LOC100273212	-	2e-1	At1g07135	glycine-rich protein	C.G.	S.X.	Please select
0.02	5e-3	40	Zm.6892.1.A1_at	AY108160.1	hypothetical protein LOC100216704	-	7e-20	At5g22060	ATJ2	C.G.	S.X.	Please select
0.03	5e-3	40	Zm.5476.2.S1_at	CF016143	IQ calmodulin-binding motif family protein	-	2e-1	At1g29060	-	C.G.	S.X.	Please select
0.03	2e-2	38	Zm.4489.1.A1_at	AY108162.1	-	-	1e-1	At5g40540	protein kinase, putative	C.G.	S.X.	Please select
0.03	9e-2	36	Zm.2098.1.S1_at	AY105824.1	oleosin1	-	2e+0	At2g47780	rubber elongation factor (REF) protein-related	C.G.	S.X.	Please select
0.03	9e-2	36	Zm.19297.1.A1_at	CO524882	hypothetical protein LOC100193577	-	2e-2	At3g49800	BSD domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	8e-1	34	Arabidopsis thaliana	At2g38870	818471	protease inhibitor, putative	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-1	36	Glycine max	HgAffx.19715.1.S1_at	CA939465	-	-	4e+0	At5g63100	unknown protein	C.G.	S.X.	Please select
0.15	5e-25	113	Hordeum vulgare	Contig7404_at	Contig7404	-	-	2e+0	At5g65740	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.10	2e-34	147	Oryza sativa	Os01g0663800	AK102816.1	-	Protein of unknown function DUF1296 family protein	3e-5	At1g29370	kinase-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	34	Populus trichocarpa	PtpAffx.37035.2.S1_a_at	BU819097	hypothetical protein	-	1e-2	At5g20540	ATBRXL4 (BREVIS RADIX-LIKE 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	5e-2	38	Triticum aestivum	Ta.16447.1.S1_at	CA606565	-	-	2e+0	At5g32450	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1609980_a_at	CA818363	spermine synthase	-	4e+0	At5g53120	SPDS3 (SPERMIDINE SYNTHASE 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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