Gene omics information

Query gene ID	Zm.4097.1.A1_at
Gene name	hypothetical protein LOC100280288
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.4097.1.A1_at	BG266571	hypothetical protein LOC100280288	-	3e+0	At5g48890	transcription factor	S.X.	H.G.	Please select
0.59	76.1	Zm.3613.1.A1_at	BG841007	hypothetical protein LOC100273532	-	4e-24	At5g10540	peptidase M3 family protein / thimet oligopeptidase family protein	S.X.	H.G.	Please select
0.58	75.1	Zm.10105.1.A1_at	BM379807	-	-	5e+0	At4g11870	unknown protein	S.X.	H.G.	Please select
0.56	74.4	Zm.1937.1.S1_at	CN845484	hypothetical protein LOC100277662	-	5e+0	At3g50800	unknown protein	S.X.	H.G.	Please select
0.52	67.3	Zm.19001.1.A1_at	AY108422.1	-	-	3e-6	At3g01540	DRH1 (DEAD BOX RNA HELICASE 1)	S.X.	H.G.	Please select
0.52	67.3	Zm.6015.1.A1_at	AI666198	-	-	1e+0	At5g24570	unknown protein	S.X.	H.G.	Please select
0.51	66.4	Zm.4467.1.S1_a_at	AW054142	hypothetical protein LOC100193777	-	1e-5	At1g36280	adenylosuccinate lyase, putative / adenylosuccinase, putative	S.X.	H.G.	Please select
0.49	61.9	Zm.564.1.S1_a_at	AF244704.1	glutathione S-transferase GST 39	-	3e-2	At2g36640	ATECP63 (EMBRYONIC CELL PROTEIN 63)	S.X.	H.G.	Please select
0.48	61.3	Zm.17556.1.S1_at	CK369094	hypothetical protein LOC100191272	-	1e-4	At5g36700	PGLP1 (2-PHOSPHOGLYCOLATE PHOSPHATASE 1)	S.X.	H.G.	Please select
0.48	61.3	Zm.4164.4.A1_a_at	BM267227	-	-	3e+1	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.7	96.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM206287	Left pulvinus control total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.6	95.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM202318	B73xMo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.3	94.7	GSM206288	Upper pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.2	94.5	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	32	Zm.7107.1.S1_at	CF051037	RNA-binding protein 25	-	4e-2	At5g19960	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.5851.4.A1_at	CF042267	hypothetical protein LOC100272411	-	6e-1	At5g02120	OHP (ONE HELIX PROTEIN)	C.G.	S.X.	Please select
0.02	6e+0	30	Zm.8331.1.A1_at	BM349811	-	-	9e-3	At1g72430	auxin-responsive protein-related	C.G.	S.X.	Please select
0.02	6e+0	30	Zm.7755.1.A1_at	CN845074	hypothetical protein LOC100275494	-	3e-18	At1g16460	ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2)	C.G.	S.X.	Please select
0.02	6e+0	30	Zm.6755.1.A1_a_at	CF629886	nicotiana lesion-inducing like	-	2e+0	At2g12945	unknown protein	C.G.	S.X.	Please select
0.02	6e+0	30	Zm.6755.1.A1_at	CF629886	nicotiana lesion-inducing like	-	2e+0	At2g12945	unknown protein	C.G.	S.X.	Please select
0.01	6e+0	30	Zm.6559.1.A1_at	CF051688	-	-	3e-14	At5g26830	threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS)	C.G.	S.X.	Please select
0.01	6e+0	30	Zm.6223.1.A1_at	AY108739.1	pseudouridylate synthase/ transporter	-	7e-11	At5g14460	pseudouridine synthase/ transporter	C.G.	S.X.	Please select
0.02	6e+0	30	Zm.2735.1.A1_at	AW067028	hypothetical protein LOC100217013	-	5e-1	At5g65080	MAF5 (MADS AFFECTING FLOWERING 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At5g48890	834947	transcription factor	F:transcription factor activity;P:regulation of transcription;C:intracellular;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	Gma.13091.2.S1_at	BU090093	-	-	1e-5	At5g49940	NFU2 (NIFU-LIKE PROTEIN 2)	C.G.	S.X.	Please select
0.04	7e+0	30	Hordeum vulgare	HV_CEb0020I07f2_x_at	HV_CEb0020I07f2	-	-	2e+0	At4g14950	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	OsAffx.27455.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	PtpAffx.43860.1.A1_at	CV255790	-	-	3e-4	At3g57062	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	1e-6	54	Triticum aestivum	TaAffx.56961.1.S1_at	CA639331	-	-	7e-2	At1g33400	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1615192_x_at	CF206355.1	similar to polyubiquitin	-	9e-38	At5g03240	UBQ3 (POLYUBIQUITIN 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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