Gene omics information

Query gene ID	Zm.4061.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.4061.1.S1_at	AI834355	-	-	3e+0	At3g25030	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.14497.8.A1_s_at	CO527469	60S ribosomal protein L27 /// 60S ribosomal protein L27	-	2e-6	At3g22230	60S ribosomal protein L27 (RPL27B)	S.X.	H.G.	Please select
0.61	79.5	Zm.7126.2.S1_at	AY110592.1	-	-	2e-9	At3g51460	RHD4 (ROOT HAIR DEFECTIVE4)	S.X.	H.G.	Please select
0.43	52.8	Zm.2142.1.A1_at	CK369102	hypothetical protein LOC100191429	-	1e-8	At2g42880	ATMPK20	S.X.	H.G.	Please select
0.43	52.8	Zm.5824.1.A1_at	AI649789	-	-	2e+0	At5g10680	calmodulin-binding protein-related	S.X.	H.G.	Please select
0.36	41.3	Zm.5833.1.A1_at	CA398697	adenylate kinase	-	1e-2	At5g47840	AMK2 (Adenosine monophosphate kinase)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.7	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.9	99.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.2	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.0	99.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.9	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.1	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.4	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.7	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	781	Zm.4061.1.A1_at	AI834355	-	-	3e+0	At3g25030	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	9e-2	36	Zm.13316.1.S1_at	CA827638	hypothetical protein LOC100277642	-	5e-1	At3g59640	glycine-rich protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.4497.1.A1_at	BM336128	hypothetical protein LOC100193897	-	7e-1	At2g20940	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	34	Zm.2302.1.A1_at	CF626423	hypothetical protein LOC100193695	-	2e-66	At3g58610	ketol-acid reductoisomerase	C.G.	S.X.	Please select
0.04	3e-1	34	Zm.15084.1.A1_at	BM350611	-	-	6e-2	At1g62240	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.13243.1.S1_at	AY059646.1	alternative oxidase AOX1 precursor	-	3e-6	At3g22370	AOX1A (ALTERNATIVE OXIDASE 1A)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.9277.1.S1_at	AY105731.1	hypothetical protein LOC100193622	-	1e-1	At2g25820	transcription factor	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.58.1.S1_at	U16254.1	dihydrolipoamide acetyl transferase	-	5e-27	At1g34430	EMB3003 (embryo defective 3003)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.16749.1.A1_at	CF648074	inhibitor of apoptosis-like protein	-	6e+0	At3g63410	APG1 (ALBINO OR PALE GREEN MUTANT 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At3g25030	822094	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, calmodulin binding, zinc ion binding;P:unknown;C:unknown;MPOFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	HgAffx.3699.1.S1_s_at	AF473827.1	-	-	1e+0	At2g39530	integral membrane protein, putative	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	HZ54L05r_at	HZ54L05r	-	-	1e+0	At3g55790	unknown protein	C.G.	S.X.	Please select
0.08	4e-4	46	Oryza sativa	Os02g0735800	AK065002.1	-	Protein prenyltransferase domain containingprotein	1e+0	At3g13880	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	34	Populus trichocarpa	PtpAffx.219274.1.S1_at	pmrna35144	hypothetical protein	-	2e-3	At4g15460	glycine-rich protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-1	36	Triticum aestivum	Ta.11043.1.A1_at	BQ168433	-	-	2e-1	At2g30680	-	C.G.	S.X.	Please select
0.03	9e-1	32	Vitis vinifera	1617355_at	CF604658	hypothetical protein LOC100251716	-	9e-23	At3g61530	PANB2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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