Gene omics information

Query gene ID	Zm.405.1.A1_at
Gene name	hypothetical LOC541674
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.405.1.A1_at	AF037034.2	hypothetical LOC541674	-	2e-1	At5g05340	peroxidase, putative	S.X.	H.G.	Please select
0.60	77.8	Zm.13859.1.S1_at	AF439724.1	methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1	-	1e-12	At3g12290	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	S.X.	H.G.	Please select
0.55	71.6	Zm.7122.1.A1_at	AY111472.1	-	-	2e+0	At1g35580	CINV1 (cytosolic invertase 1)	S.X.	H.G.	Please select
0.40	48.5	Zm.17316.1.A1_at	CK369406	-	-	4e+0	At5g38317	LCR58 (Low-molecular-weight cysteine-rich 58)	S.X.	H.G.	Please select
0.38	44.2	Zm.2952.1.A1_a_at	CF629660	hypothetical protein LOC100192920	-	2e-3	At3g26680	SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)	S.X.	H.G.	Please select
0.33	36.0	Zm.6076.1.A1_a_at	AY111015.1	COX VIIa-like protein	-	3e-1	At2g21195	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
45.7	100.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.3	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.1	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
5.9	97.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	2e-101	369	Zm.1616.1.A1_at	BM380022	plasma membrane-bound peroxidase 3-1	-	6e-2	At1g14540	anionic peroxidase, putative	C.G.	S.X.	Please select
0.35	2e-60	232	Zm.2707.1.S1_at	BG842199	-	-	2e-1	At5g05340	peroxidase, putative	C.G.	S.X.	Please select
0.22	2e-26	119	Zm.10660.1.A1_at	CF634854	Plasma membrane-bound peroxidase 2b	-	8e-3	At5g05340	peroxidase, putative	C.G.	S.X.	Please select
0.07	2e-14	79	Zm.16643.1.S1_at	CK144844	peroxidase 27	-	3e-3	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.09	2e-11	69	Zm.4894.1.A1_at	BM076024	-	-	1e+0	At5g05340	peroxidase, putative	C.G.	S.X.	Please select
0.08	1e-9	63	Zm.2505.1.S1_at	BG841722	hypothetical protein LOC100216859	-	4e-5	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.18	5e-9	61	Zm.9856.1.S1_at	BM381423	hypothetical protein LOC100272496	-	4e-2	At5g40150	peroxidase, putative	C.G.	S.X.	Please select
0.04	2e-8	59	Zm.11650.1.A1_at	BM379683	hypothetical protein LOC100192105	-	4e+0	At2g12405	unknown protein	C.G.	S.X.	Please select
0.06	8e-8	57	Zm.3573.1.A1_at	CF629925	peroxidase 54	-	3e-3	At5g06720	peroxidase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-1	38	Arabidopsis thaliana	At5g05340	830416	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:apoplast, cell wall;PFOBM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-7	57	Glycine max	GmaAffx.73853.1.S1_at	BM177977	-	-	8e-3	At5g06730	peroxidase, putative	C.G.	S.X.	Please select
0.42	1e-43	176	Hordeum vulgare	Contig2119_at	Contig2119	-	-	9e-9	At1g44970	peroxidase, putative	C.G.	S.X.	Please select
0.39	2e-55	218	Oryza sativa	Os07g0677300	D16442.1	-	Peroxidase	2e-4	At3g50990	electron carrier/ heme binding / peroxidase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-6	54	Populus trichocarpa	PtpAffx.206163.1.S1_at	pmrna12232	hypothetical protein	-	5e-13	At2g41480	electron carrier/ heme binding / peroxidase	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	2e-93	343	Triticum aestivum	TaAffx.85486.1.S1_at	CA622309	-	-	3e-4	At5g05340	peroxidase, putative	C.G.	S.X.	Please select
0.03	3e+0	32	Vitis vinifera	1621609_at	AY348574.1	class III peroxidase GvPx2b	-	5e-7	At5g64120	peroxidase, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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