Gene omics information

Query gene ID	Zm.4040.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	Zm.4040.1.A1_at	AI834032	-	-	5e+0	At1g53785	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.16531.2.A1_a_at	BG841648	hypothetical protein LOC100273317	-	2e-12	At5g35680	eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative	S.X.	H.G.	Please select
0.43	52.8	Zm.7012.9.S1_a_at	BE123180	hypothetical protein LOC100275729	-	3e+0	At2g27510	ATFD3 (ferredoxin 3)	S.X.	H.G.	Please select
0.40	48.5	Zm.16594.3.A1_at	CA405147	-	-	7e+0	At3g21310	unknown protein	S.X.	H.G.	Please select
0.36	41.3	Zm.14500.1.S1_at	CO525044	hypothetical protein LOC100273126	-	3e-16	At3g14390	diaminopimelate decarboxylase, putative / DAP carboxylase, putative	S.X.	H.G.	Please select
0.33	36.0	Zm.7012.9.A1_at	BE123180	-	-	3e+0	At2g27510	ATFD3 (ferredoxin 3)	S.X.	H.G.	Please select
0.27	24.6	Zm.7582.1.A1_at	BM073867	hypothetical protein LOC100216795	-	2e+0	At5g03440	unknown protein	S.X.	H.G.	Please select
0.24	19.8	Zm.6074.1.A1_at	CF033495	SINA4	-	1e-8	At4g27880	seven in absentia (SINA) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.5	99.5	GSM258194	Oh43 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
15.8	99.0	GSM258172	B37 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
13.6	98.8	GSM258176	Oh43 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
13.0	98.7	GSM258190	B37 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
12.8	98.7	GSM258185	Oh43 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
11.7	98.6	GSM258192	B84 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
10.7	98.5	GSM258183	B84 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
10.6	98.4	GSM258189	Oh43xMo17 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
8.4	98.1	GSM258180	Oh43xMo17 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
8.4	98.1	GSM258197	Oh43xB73 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	9e-3	40	Zm.7272.1.S1_at	BI430568	hypothetical protein LOC100275279	-	1e+0	At3g28590	unknown protein	C.G.	S.X.	Please select
0.02	9e-3	40	Zm.4373.1.S1_at	AY061964.1	fertilization independent endosperm1	-	2e-5	At3g20740	FIE (FERTILIZATION-INDEPENDENT ENDOSPERM)	C.G.	S.X.	Please select
0.03	9e-3	40	Zm.1661.1.A1_at	BM079681	50S ribosomal protein L27	-	5e-1	At1g15840	unknown protein	C.G.	S.X.	Please select
0.03	9e-3	40	Zm.14504.1.A1_at	AY107583.1	hypothetical protein LOC100273087	-	7e+0	At3g20395	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.9327.1.A1_at	BM349135	-	-	2e-10	At3g16630	KINESIN-13A	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.7380.1.S1_at	BM078135	hypothetical protein LOC100280093	-	6e-1	At1g51070	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.01	4e-2	38	Zm.3699.3.S1_at	AI649477	hypothetical protein LOC100273816	-	4e-10	At3g13460	ECT2	C.G.	S.X.	Please select
0.02	1e-1	36	Zm.4372.1.A1_at	CF626676	hypothetical protein LOC100273480	-	2e+0	At3g15690	biotin carboxyl carrier protein of acetyl-CoA carboxylase-related	C.G.	S.X.	Please select
0.03	1e-1	36	Zm.3792.1.S1_at	CA826763	hypothetical protein LOC100276631	-	9e-2	At2g45450	ZPR1 (LITTLE ZIPPER 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e+0	32	Arabidopsis thaliana	At1g53785	2745827	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	36	Glycine max	PsAffx.CL2577Contig1_s_at	PsAffx.CL2577Contig1	-	-	9e-1	At3g42148	unknown protein	C.G.	S.X.	Please select
0.04	1e-2	40	Hordeum vulgare	HVSMEn0023G06r2_at	HVSMEn0023G06r2	-	-	6e-2	At5g21940	unknown protein	C.G.	S.X.	Please select
0.05	1e-2	42	Oryza sativa	OsAffx.1609.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-2	40	Populus trichocarpa	PtpAffx.11317.2.A1_a_at	BU878325	hypothetical protein	-	5e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	8e-2	38	Triticum aestivum	Ta.18366.3.S1_x_at	CA689730	-	-	2e+1	At5g01070	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.03	4e-1	34	Vitis vinifera	1621423_at	CB002386	-	-	5e+0	At3g21140	FMN binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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