Gene omics information

Query gene ID	Zm.4035.1.A1_at
Gene name	hypothetical protein LOC100279841
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	75.1	Zm.4035.1.A1_at	AI834003	hypothetical protein LOC100279841	-	9e-4	At3g11110	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.44	55.7	Zm.9355.1.A1_at	BM268784	-	-	1e+1	At5g19729	unknown protein	S.X.	H.G.	Please select
0.36	41.3	ZmAffx.1022.1.S1_at	AI881590	-	-	3e+0	At5g46800	BOU (A BOUT DE SOUFFLE)	S.X.	H.G.	Please select
0.33	36.0	Zm.12169.1.S1_at	CK370768	-	-	1e+0	At4g35300	TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2)	S.X.	H.G.	Please select
0.18	11.6	Zm.16482.1.A1_at	BM259598	hypothetical protein LOC100280271	-	9e-1	At4g35850	pentatricopeptide (PPR) repeat-containing protein	S.X.	H.G.	Please select
0.13	6.8	Zm.10224.2.S1_at	CF243959	-	-	1e-5	At3g11397	PRA1.A3 (PRENYLATED RAB ACCEPTOR 1.A3)	S.X.	H.G.	Please select
0.08	3.4	Zm.17144.1.S1_at	AY280632.1	single myb histone 6	-	4e-3	At1g49950	DNA-binding protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.3	99.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.8	99.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM206332	Lower pulvinus 15 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
11.4	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-4	46	Zm.4037.1.A1_at	X67561.1	Zmhox1a homeobox protein	-	3e-5	At3g19510	HAT3.1	C.G.	S.X.	Please select
0.02	4e-4	46	Zm.4119.1.S1_at	AI854985	ATP binding protein	-	2e-4	At3g09010	protein kinase family protein	C.G.	S.X.	Please select
0.02	4e-4	46	Zm.13669.2.A1_at	BM350396	-	-	2e-9	At4g02630	protein kinase family protein	C.G.	S.X.	Please select
0.02	4e-4	46	Zm.13669.2.A1_a_at	BM350396	-	-	2e-9	At4g02630	protein kinase family protein	C.G.	S.X.	Please select
0.02	1e-3	44	Zm.8493.1.S1_at	BM074400	hypothetical protein LOC100272804	-	1e-1	At1g75700	HVA22G (HVA22-LIKE PROTEIN G)	C.G.	S.X.	Please select
0.03	6e-3	42	Zm.9130.1.A1_at	BM268570	-	-	7e-2	At3g62220	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.01	6e-3	42	Zm.359.1.S1_at	U82481.1	kinase interacting kinase1	-	2e-6	At3g16030	CES101 (CALLUS EXPRESSION OF RBCS 101)	C.G.	S.X.	Please select
0.04	6e-3	42	Zm.1140.1.S1_at	BM073428	hypothetical protein LOC100279272	-	4e-14	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.7612.1.A1_at	BM079194	hypothetical protein LOC100274866	-	7e-3	At4g17670	senescence-associated protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e-4	46	Arabidopsis thaliana	At3g11110	820282	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	7e-2	40	Glycine max	PsAffx.CL551Contig1_at	PsAffx.CL551Contig1	-	-	3e+0	At4g03965	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.07	1e-13	77	Hordeum vulgare	AF474072_CDS-1_at	AF474072_CDS-1	-	-	2e-1	At5g12310	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.43	1e-115	418	Oryza sativa	Os09g0408900	9637.m02085	-	Protein kinase family protein	2e+0	At4g34600	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-6	56	Populus trichocarpa	PtpAffx.224603.1.S1_at	pmrna43289	hypothetical protein	-	7e-34	At1g70740	protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	2e-7	57	Triticum aestivum	Ta.7511.1.S1_at	CA652130	-	-	2e-10	At1g79620	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select
0.02	2e-2	40	Vitis vinifera	1620275_x_at	CF204388.1	-	-	1e-4	At5g66400	RAB18 (RESPONSIVE TO ABA 18)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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