Gene omics information

Query gene ID	Zm.4033.1.A1_at
Gene name	hypothetical protein LOC100273217
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.89	96.8	Zm.4033.1.A1_at	CF636055	hypothetical protein LOC100273217	-	5e-2	At5g43940	HOT5 (sensitive to hot temperatures 5)	S.X.	H.G.	Please select
0.65	82.1	Zm.7012.3.S1_at	CO531966	hypothetical protein LOC100275729	-	7e-1	At5g65330	AGL78 (AGAMOUS-LIKE 78)	S.X.	H.G.	Please select
0.48	61.3	Zm.13618.1.A1_at	AY107476.1	-	-	3e-1	At2g34850	MEE25 (maternal effect embryo arrest 25)	S.X.	H.G.	Please select
0.43	52.8	Zm.2113.1.S1_at	AW267577	hypothetical protein LOC100277741	-	6e-6	At3g19630	radical SAM domain-containing protein	S.X.	H.G.	Please select
0.39	45.6	Zm.9582.1.A1_at	BM340978	-	-	2e+0	At3g05550	hypoxia-responsive family protein	S.X.	H.G.	Please select
0.38	44.2	Zm.5600.1.A1_at	BG873946	thioredoxin H-type 5	-	4e-1	At2g06850	EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE)	S.X.	H.G.	Please select
0.37	42.3	Zm.16700.1.A1_at	AY107355.1	-	-	3e-21	At5g48460	fimbrin-like protein, putative	S.X.	H.G.	Please select
0.36	41.3	Zm.16525.3.A1_x_at	AI738309	deoxy xylulose synthase 2	-	7e-44	At5g56010	HSP81-3	S.X.	H.G.	Please select
0.34	37.2	Zm.16043.1.S1_at	CF244554	-	-	3e+1	At5g26262	unknown protein	S.X.	H.G.	Please select
0.33	36.0	Zm.6855.1.A1_at	CK369715	hypothetical protein LOC100193041	-	7e+0	At2g14378	-	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.7	98.5	GSM253277	ZM_8d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
8.6	98.1	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
7.9	97.9	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
7.0	97.7	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.9	97.7	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.9	96.7	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.6	96.4	GSM253271	ZM_4.5d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
4.2	96.0	GSM323172	Zm_SG200Dpep1_24hpi_III	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
3.9	95.7	GSM206302	Upper pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.7	95.4	GSM253272	ZM_4.5d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-3	42	Zm.2742.1.A1_at	AY111235.1	formaldehyde dehydrogenase homolog1	-	6e-57	At5g43940	HOT5 (sensitive to hot temperatures 5)	C.G.	S.X.	Please select
0.02	9e-2	38	Zm.10514.1.S1_at	BQ485919	-	-	4e-1	At5g51120	PABN1 (POLYADENYLATE-BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.7851.1.A1_at	BM074061	hypothetical protein LOC100274880	-	5e+0	At5g61230	ankyrin repeat family protein	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.6950.1.A1_at	CO534341	PP7	-	9e-4	At5g63870	PP7 (SERINE/THREONINE PHOSPHATASE 7)	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.5932.1.S1_at	AB071695.1	response regulator 10	-	3e-1	At2g01760	ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14)	C.G.	S.X.	Please select
0.03	4e-1	36	Zm.18451.1.A1_at	CO532342	hypothetical protein LOC100272357	-	1e-5	At1g64710	alcohol dehydrogenase, putative	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.8938.1.S1_at	AY104264.1	IDP636 protein	-	1e-1	At1g75360	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.5382.1.A1_at	CO519926	Hypothetical protein LOC100192877	-	9e-1	At1g73000	-	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.5382.1.S1_at	CO521542	hypothetical protein LOC100192877	-	9e-1	At1g73000	-	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-2	40	Arabidopsis thaliana	At5g43940	834417	HOT5 (sensitive to hot temperatures 5)	Encodes a glutathione-dependent formaldehyde dehydrogenase (also known as class III type alcohol dehydrogenase) reduces S-nitrosoglutathione (GSNO), the condensation product of glutathione and NO, that is a naturally occurring NO reservoir and also a reactive nitrogen intermediate. Gene expression is reduced by wounding and induced by salicylic acid. Is required for the acclimation of plants to high temperature and for fertility.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	PsAffx.C15000034_at	PsAffx.C15000034	-	-	2e+0	At3g26450	major latex protein-related / MLP-related	C.G.	S.X.	Please select
0.17	3e-11	69	Hordeum vulgare	Contig13799_at	Contig13799	-	-	2e-5	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.53	6e-62	240	Oryza sativa	Os03g0189600	AK066331.1	-	Alcohol dehydrogenase	2e-1	At1g77120	ADH1 (ALCOHOL DEHYDROGENASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	5e+0	34	Populus trichocarpa	PtpAffx.219195.1.S1_at	pmrna35047	hypothetical protein	-	1e+0	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.41	0	684	Triticum aestivum	TaAffx.113763.1.S1_at	CA605494	-	-	4e+0	At4g09840	unknown protein	C.G.	S.X.	Please select
0.02	2e+1	30	Vitis vinifera	1619873_at	CF404612	hypothetical protein LOC100264420	-	2e-9	At5g42250	alcohol dehydrogenase, putative	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage