Gene omics information

Query gene ID	Zm.4021.1.A1_at
Gene name	hypothetical protein LOC100217057
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.4021.1.A1_at	AW231310	hypothetical protein LOC100217057	-	7e-1	At5g62610	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.5051.1.A1_at	AI600543	nucleotide binding protein	-	5e+0	At5g09990	PROPEP5 (Elicitor peptide 5 precursor)	S.X.	H.G.	Please select
0.67	85.8	Zm.18099.1.A1_at	CF631457	hypothetical protein LOC100216597	-	2e-3	At5g48560	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.17441.1.A1_at	BM268338	-	-	5e-1	At5g06910	ATJ6 (Arabidopsis J-domain protein 6)	S.X.	H.G.	Please select
0.61	79.5	ZmAffx.212.1.A1_at	AI670220	-	-	3e+0	At5g21010	ATBPM5 (BTB-POZ and MATH domain 5)	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.1189.1.S1_at	BE025258	hypothetical protein LOC100274447	-	8e-1	At3g04181	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.3	96.1	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.2	96.0	GSM202318	B73xMo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
4.2	96.0	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.9	95.7	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.8	95.5	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.8	95.5	GSM205375	Mo17xB73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.5	95.1	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.5	95.1	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.5	95.1	GSM202313	B73xMo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.5	95.1	GSM206318	Lower pulvinus 2 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-2	38	Zm.1387.1.S1_at	AW927977	pseudouridylate synthase	-	1e+0	At3g17140	invertase inhibitor-related	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.9563.1.A1_at	AY072297.1	flavonoid 3-monooxygenase	-	3e+0	At4g16410	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.8301.1.A1_at	BM379812	hypothetical protein LOC100278224	-	1e+0	At4g21780	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.7860.1.A1_at	BM333940	-	-	2e-3	At4g37020	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.3992.1.S1_at	BG841673	hypothetical protein LOC100280384	-	6e-2	At2g45140	PVA12 (PLANT VAP HOMOLOG 12)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.318.2.S1_a_at	U66403.1	phosphate/phosphoenolpyruvate translocator precursor	-	5e-8	At5g33320	CUE1 (CAB UNDEREXPRESSED 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.2307.1.S1_at	AY104400.1	hypothetical protein LOC100279946	-	1e-17	At4g26100	CK1 (CASEIN KINASE 1)	C.G.	S.X.	Please select
0.02	5e+0	32	Zm.9171.1.A1_at	BM339804	hypothetical protein LOC100278000	-	5e+0	At5g43460	lesion inducing protein-related	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.8222.1.A1_at	CK826764	-	-	2e+0	At4g34610	BLH6 (BELL1-LIKE HOMEODOMAIN 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-1	36	Arabidopsis thaliana	At5g62610	836382	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;PFM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	7e-2	40	Glycine max	GmaAffx.14509.1.S1_at	BM523469	-	-	3e+0	At3g16360	AHP4 (HPT PHOSPHOTRANSMITTER 4)	C.G.	S.X.	Please select
0.03	1e+0	34	Hordeum vulgare	rbaal18i13_s_at	rbaal18i13	-	-	8e+0	At5g39520	unknown protein	C.G.	S.X.	Please select
0.39	4e-44	180	Oryza sativa	Os02g0672400	AK064365.1	-	Conserved hypothetical protein	2e-1	At2g35430	zinc finger (CCCH-type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-1	38	Populus trichocarpa	PtpAffx.208833.1.S1_at	pmrna17513	hypothetical protein	-	5e-4	At1g09290	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	3e+0	34	Triticum aestivum	TaAffx.52983.1.S1_at	CA698114	-	-	4e+0	At5g23840	MD-2-related lipid recognition domain-containing protein / ML domain-containing protein	C.G.	S.X.	Please select
0.03	3e+0	32	Vitis vinifera	1619834_at	CB981026	-	-	3e-5	At1g09290	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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