Gene omics information

Query gene ID	Zm.4005.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.4005.1.A1_at	BE345363	-	-	4e+0	At1g68140	-	S.X.	H.G.	Please select
0.67	85.8	Zm.3410.1.A1_at	AB035645.1	ferredoxin	-	1e-42	At5g66190	FNR1 (FERREDOXIN-NADP(+)-OXIDOREDUCTASE 1)	S.X.	H.G.	Please select
0.60	77.8	Zm.370.1.S1_at	AF023159.1	starch synthase DULL1	-	1e-21	At1g11720	ATSS3 (starch synthase 3)	S.X.	H.G.	Please select
0.55	71.6	Zm.3701.1.S1_at	CF636730	cysteine protease 1	-	1e-2	At5g43060	cysteine proteinase, putative / thiol protease, putative	S.X.	H.G.	Please select
0.44	55.7	Zm.8482.1.S1_at	BM074322	inhibitor of growth protein 5	-	3e-12	At3g24010	ING1 (INHIBITOR OF GROWTH 1)	S.X.	H.G.	Please select
0.29	28.1	Zm.1250.2.A1_at	AY104390.1	Hypothetical protein LOC100191515	-	6e+0	At5g17010	sugar transporter family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.9	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	6e-28	123	Zm.10287.2.A1_at	AI665655	-	-	8e-1	At2g45250	unknown protein	C.G.	S.X.	Please select
0.27	6e-28	123	Zm.10287.2.S1_a_at	AI665655	-	-	8e-1	At2g45250	unknown protein	C.G.	S.X.	Please select
0.11	1e-25	115	Zm.7011.1.S1_s_at	CA398268	hypothetical protein LOC100191203	-	3e-19	At4g21110	G10 family protein	C.G.	S.X.	Please select
0.11	1e-25	115	Zm.7011.1.S1_at	CA398268	hypothetical protein LOC100191203	-	3e-19	At4g21110	G10 family protein	C.G.	S.X.	Please select
0.20	5e-25	113	Zm.14867.1.A1_at	AI621826	-	-	2e-9	At4g00750	dehydration-responsive family protein	C.G.	S.X.	Please select
0.15	8e-24	109	Zm.15518.1.A1_at	CB329665	hypothetical protein LOC100273407	-	4e-11	At2g01490	phytanoyl-CoA dioxygenase (PhyH) family protein	C.G.	S.X.	Please select
0.22	3e-23	107	Zm.2146.1.A1_at	AW287813	-	-	5e+0	At5g35475	-	C.G.	S.X.	Please select
0.15	3e-20	97	Zm.1735.1.S1_at	AY103687.1	photosystem I reaction center subunit III	-	2e-10	At1g31330	PSAF (photosystem I subunit F)	C.G.	S.X.	Please select
0.12	1e-19	95	Zm.4776.2.A1_at	CF026718	pyruvate dehydrogenase E1 component alpha subunit	-	1e-39	At1g59900	AT-E1 ALPHA	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At1g68140	843142	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e-15	81	Glycine max	Gma.158.1.S1_at	AF020193.1	DNA polymerase delta	-	4e-168	At5g63960	EMB2780 (EMBRYO DEFECTIVE 2780)	C.G.	S.X.	Please select
0.12	4e-35	147	Hordeum vulgare	Contig14333_at	Contig14333	-	-	1e-58	At5g63960	EMB2780 (EMBRYO DEFECTIVE 2780)	C.G.	S.X.	Please select
0.06	1e-23	111	Oryza sativa	Os11g0186400	AB037899.1	-	DNA polymerase delta catalytic subunit (EC2.7.7.7)	5e-47	At5g63960	EMB2780 (EMBRYO DEFECTIVE 2780)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	3e-7	56	Populus trichocarpa	PtpAffx.159716.1.A1_at	CV261943	hypothetical protein	-	2e-24	At5g63960	EMB2780 (EMBRYO DEFECTIVE 2780)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	6e-5	48	Triticum aestivum	Ta.17493.1.S1_at	CA621264	-	-	1e+0	At3g25640	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	34	Vitis vinifera	1620991_at	CB344999	hypothetical LOC100241030	-	0	Atmg00730	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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